View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_1 (Length: 702)
Name: NF3238_low_1
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 12 - 686
Target Start/End: Complemental strand, 45808845 - 45808172
Alignment:
| Q |
12 |
atcatcaggtagagttcctacaatttcacatagagcttgtttgtaaaaaattcactttccaaagttttcatccatttattacatattcttaaaaaatgaa |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45808845 |
atcatcaggtagagttcctacaatttcacatagagcttgtttgtaaaaaattcactttccaaagttttcatccatttattacataaac------------ |
45808758 |
T |
|
| Q |
112 |
aacatgataataatcaaaatgaagctgttttgagtagcttctcttgtaaacaaaaacaacagcatctatatattttctttaataaatcttcaaaagtaaa |
211 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45808757 |
aacagcataataatcaaagtgaagctgttttgagtagcttctcttgtaaacaaaaacaacagcatctatatattttctttaataaatcttcaaaagtaaa |
45808658 |
T |
|
| Q |
212 |
tatctagaattatatagcatcaaaaccaagtttgcgtaaactttcaatagactacatcgaaaacaaaaatcagattttaccttcaactcctcaagggaga |
311 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45808657 |
tatctagaattatatagcatcaaaaccacgtttgcgtaaactttcaataaactacatcgaaaacaaaaatcagattttaccttcaactcctcaagggaga |
45808558 |
T |
|
| Q |
312 |
accctttaccagcccttagtttcatattgtatttctgagtctgtccatgaacaataggcctgagaggtccagcagtaggccttgggaaaatcttcaccgc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45808557 |
accctttaccagcccttagtttcatattgtatttctgagtctgtccatgaacaataggcctgagaggtccagcagtaggccttgggaaaatcttcaccgc |
45808458 |
T |
|
| Q |
412 |
cttcttctgacgagctgaaaatgcaaaaacccatcaaagttaacatttttattttcaatttacaataatacatcaaaataatagaattatagagaaaatt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45808457 |
cttcttctgacgagctgaaaatgcaaaaacccatcaaagttaacatttttattttcaatttacaataatacatcaaaataatagaattatagagaaaatt |
45808358 |
T |
|
| Q |
512 |
actacctaagcgtcttcttgtcttccttgcaggttggttaaaccatgtcttgacatagttttgccaatgcttgcggaagtgttcgttagggataacattg |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45808357 |
actacctaagcgtcttcttgtcttccttgcaggttggttaaaccatgtcttgacatagttttgccaatgcttgcggaagtgttcgttagggataacattg |
45808258 |
T |
|
| Q |
612 |
ttatgcttcaccatttttcaccttaccttcgaatat-----------caataataaatcagaaaggtttaattgaaatggagtatt |
686 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
45808257 |
ttatgcttcaccatttttcaccttaccttcgaatatcaaccaaaaaacaataataaatcagaaaggtttaattgaaatcgagtatt |
45808172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 285 - 447
Target Start/End: Original strand, 11045719 - 11045882
Alignment:
| Q |
285 |
attttaccttcaactcctcaagggagaaccctttaccagcccttagtttcatattgtatttctgagtctgtccatgaacaataggcctgagaggtccagc |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11045719 |
attttaccttcaactcctcaagggagaaccctttaccagcccttagtttcatgttgtatttctgagtctgtccatgaacaataggcctgagaggtccagc |
11045818 |
T |
|
| Q |
385 |
agtaggccttgggaaaatcttcaccgccttcttctgacgagctgaa-aatgcaaaaacccatca |
447 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||||| |
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| T |
11045819 |
tgtaggccttgggaaaatcttcactgccttcttctgacgagctgaagaatacaacaacccatca |
11045882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 514 - 649
Target Start/End: Original strand, 11046361 - 11046497
Alignment:
| Q |
514 |
tacctaagcgtcttcttgtcttccttgcaggttggttaaaccatgtcttgacatagttttgccaatgcttgcggaagtgttcgttagggataacattgtt |
613 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11046361 |
tacctaagcgtcttcttgtcttccttgcaggttggttaaaccatgtcttaacatagttttgccaatgcttgcggaagtgttcgttggggataacattgtt |
11046460 |
T |
|
| Q |
614 |
atgcttcacca-tttttcaccttaccttcgaatatca |
649 |
Q |
| |
|
||||||||||| ||||| ||||||||| | ||||||| |
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| T |
11046461 |
atgcttcaccatttttttaccttacctgcaaatatca |
11046497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 11045375 - 11045492
Alignment:
| Q |
12 |
atcatcaggtagagttcctacaatttcacatagagcttgtttgtaaaaaattcactttccaaagttttcatccatttattacatattcttaaaaaatgaa |
111 |
Q |
| |
|
|||||||||||||| || || |||| ||||| |||||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||||| || |
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| T |
11045375 |
atcatcaggtagagatcatataattccacatggagcttgtttataaaaaaa--acttccaaaagttttcatccatttattacatattcttaaaaaacgag |
11045472 |
T |
|
| Q |
112 |
aacatgataataatcaaaat |
131 |
Q |
| |
|
||||| | ||||||||||| |
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|
| T |
11045473 |
aacatagtcataatcaaaat |
11045492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 522 - 625
Target Start/End: Complemental strand, 6900327 - 6900224
Alignment:
| Q |
522 |
cgtcttcttgtcttccttgcaggttggttaaaccatgtcttgacatagttttgccaatgcttgcggaagtgttcgttagggataacattgttatgcttca |
621 |
Q |
| |
|
|||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||| |
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| T |
6900327 |
cgtcttctggtcttccttgctggttgattgaaccatgtcttgacatagttttgccaatgcttacggaagtgttcatttgggataacattgttgtgcttca |
6900228 |
T |
|
| Q |
622 |
ccat |
625 |
Q |
| |
|
|||| |
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|
| T |
6900227 |
ccat |
6900224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 414
Target Start/End: Complemental strand, 6901007 - 6900882
Alignment:
| Q |
289 |
taccttcaactcctcaagggagaaccctttaccagcccttagtttcatattgtatttctgagtctgtccatgaacaataggcctgagaggtccagcagta |
388 |
Q |
| |
|
|||||||||||| ||||| || || ||||| || || | |||||||| ||||| || ||| || || |||||||| ||||| |||||||||||||| |
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| T |
6901007 |
taccttcaactcttcaagagaaaatcctttcccggcacgaagtttcatgttgtacttggcagtttgaccgtgaacaattggcctaagaggtccagcagtt |
6900908 |
T |
|
| Q |
389 |
ggccttgggaaaatcttcaccgcctt |
414 |
Q |
| |
|
||||| ||||||||||| || ||||| |
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|
| T |
6900907 |
ggcctggggaaaatcttaacggcctt |
6900882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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