View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3238_low_10 (Length: 452)
Name: NF3238_low_10
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Complemental strand, 182676 - 182260
Alignment:
| Q |
14 |
cagagaatgaaacaagtataccaagatgtccaaccatcataagagaaaccacttgaagaagatattgtgaaacagttacagctaccattggagctgccac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
182676 |
cagagaatgaaacaagtataccaagatgtccaaccatcataagagaaaccacttgaagaagatattgtgaaacagttacagctaccattggagctgcaac |
182577 |
T |
|
| Q |
114 |
gaaactcactttcttcaactcttgaacaaatgtactctcaatctcatcat---tctttcttatcaatggtgttgtcacctccttactcatctctctagag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
182576 |
gaaactcactttcttcaactcttgaacaaatgtactctcaatctcatgatcactctttcttatcaatggtgttgtcacctccttactcatctctctagag |
182477 |
T |
|
| Q |
211 |
ttgtttttcattaaatgtgatcactatgaatatgatatcagagatttatatataggagtgaaagagttttttctttcttcttctacctatatggaaagta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
182476 |
ttgtttttcattaaatgtgatcactatgaatatgatatcagagatttatatataggagtgaaagagttgtttctttcttcttctacctatatggaaagta |
182377 |
T |
|
| Q |
311 |
agtgtggttaatgttaatatttatggtcaaaaaccaagttgcatattatattaataataataaatttaaaattgtgcttctgcacacagaatgagaatga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
182376 |
agtgtggttaatgttaatatttatggtcaaaaaccaagttgcatat--------taataataaatttaaaattgtgcttctgcacacagaatgaggatga |
182285 |
T |
|
| Q |
411 |
cagaattgaagagtgtgttgtttgt |
435 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
182284 |
cagaattgaagagtgtgttgtttgt |
182260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University