View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_14 (Length: 430)
Name: NF3238_low_14
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 45304738 - 45305149
Alignment:
| Q |
1 |
atacccccagctttaccatcacagtaatattgcagtcaacagttaaggaacaagagccatttaagggcttgacttctcatggtcaggggtgtcccaaccc |
100 |
Q |
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| T |
45304738 |
atacccccagctttaccatcacagtaatattgcagtcaacagttaaggaacaagagccatttaagggcttgacttctcatggtcaggggtgtcccaaccc |
45304837 |
T |
|
| Q |
101 |
acgacggtttcaagaaataagcttcatgattgctagccaaactctcctaggaggctttctatcttttgtatgtttgatgaatttttaactaacatcattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45304838 |
acgacggtttcaagaaataagcttcatgattgctagccaaactctcctaggaggctttctatcttttgtatgtttgatgaatttttgactaacatcattc |
45304937 |
T |
|
| Q |
201 |
cttgtgttgctgtcatacatggttttcctctccttatagaaaggactcttggggcccatgttaccatatgattgcttctatccctgaggttattgagcgg |
300 |
Q |
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| T |
45304938 |
cttgtgttgctgtcatacatggttttcctctccttatagaaaggactcttggggcccatgttaccatatgattgcttctatccctgaggttattgagctg |
45305037 |
T |
|
| Q |
301 |
taactactatagcttgtggactttattggattattgccaaaccttttctcactgtgatccataattttcctcccatattgggttgatcatgcttattttt |
400 |
Q |
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| T |
45305038 |
taactactatagcttgtggactttattggattattgccaaaccttttctcactgtgatccataattttcctcccatattgggttgatcatgcttattttt |
45305137 |
T |
|
| Q |
401 |
gaagaactcttc |
412 |
Q |
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| T |
45305138 |
gaagaactcttc |
45305149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 42575951 - 42575801
Alignment:
| Q |
123 |
ttcatgattgctagccaaactctcctaggaggctttctatcttttgtatgtttgatgaatttttaactaacatcattccttgtgttgctgtcatacatgg |
222 |
Q |
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| T |
42575951 |
ttcataattcctagccagcctgtcctaggagactttttatcttttgtatgtttggtgaattttga-ctaacatcattccttgtgttgttgtcatacatgg |
42575853 |
T |
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| Q |
223 |
ttttcctctccttatagaaaggactcttggggcccatgttaccatatgattg |
274 |
Q |
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| T |
42575852 |
tcttcctctccttatagaaaggactcttagggtccatattatcatctgattg |
42575801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 42564164 - 42564251
Alignment:
| Q |
211 |
tgtcatacatggttttcctctccttatagaaaggactcttggggcccatgttaccatatgattgcttctatccctgaggttattgagc |
298 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||| ||| ||| ||| ||||||||||||| ||| | ||||||||| |
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| T |
42564164 |
tgtcatacatggtcttcctctccttatagaaaggactcttagggttcatattatcatctgattgcttctattcctatgcttattgagc |
42564251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 14956586 - 14956437
Alignment:
| Q |
93 |
cccaacccacgacggtttcaagaaataagcttcatgattgctagccaaactctcctaggaggctttctatcttttgtatgtttgatgaatttttaactaa |
192 |
Q |
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||||||||| ||| ||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| | |||||||| |||| |
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| T |
14956586 |
cccaacccaggacagttccaagaaataagtttcatgattgctgaccagcctctcctaggaggctttctatcttttgtatgttgggcgaattttttactag |
14956487 |
T |
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| Q |
193 |
catcattccttgtgttgctgtcatacatggttttcctctccttatagaaa |
242 |
Q |
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|||||||| |||||||||||||||||||| | ||| | ||||||||||| |
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| T |
14956486 |
catcattcattgtgttgctgtcatacatgatcttctacaccttatagaaa |
14956437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 14951743 - 14951618
Alignment:
| Q |
111 |
caagaaataagcttcatgattgctagccaaactctcctaggaggctttctatcttttgtatgtttgatgaatttttaactaacatcattccttgtgttgc |
210 |
Q |
| |
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|||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||| || ||||||| | |
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| T |
14951743 |
caagaaataagcttcatgattgctggacagcctctcctaggaggctttctatcttttgtatgtttggttaattttttactagcatcaatcattgtgttcc |
14951644 |
T |
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| Q |
211 |
tgtcatacatggttttcctctcctta |
236 |
Q |
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||||||||| | | |||||||||||| |
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| T |
14951643 |
tgtcatacaagatcttcctctcctta |
14951618 |
T |
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