View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_17 (Length: 417)
Name: NF3238_low_17
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 402
Target Start/End: Complemental strand, 1178052 - 1177663
Alignment:
| Q |
10 |
gcacagaaaccatacagggaatcatcatacttagagtgacagaatgagggtgcagggggtataaggtggacctgtttagttgttgggttccatagaatca |
109 |
Q |
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| T |
1178052 |
gcacagaaaccatacagggaatcatcatacttagagtgacagaatgagggtgcagggggtataaggtggacctgtttagttgttgggttccatagaatca |
1177953 |
T |
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| Q |
110 |
agtgaccaagagttgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatgtttcgattcggtctacgatttcatcaccaggaaa |
209 |
Q |
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| T |
1177952 |
agtgaccaagagttgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatgtttcaattcggtctacgaattgatcaccaggaaa |
1177853 |
T |
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| Q |
210 |
gagggagcagaagtagatacgttccaactcctcgccgccaccgtcacaggagagaagagtgatgtagggaggtttgaatccatcaatgggtctgtgatag |
309 |
Q |
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| T |
1177852 |
gagggagcagaagtagatatgttccaactcct---cgccaccatcgcaggagagaagagtgatgtagggaggtttgaatccatcaatgggtctgtgatag |
1177756 |
T |
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| Q |
310 |
atcatgagactatggcctttatcgtatttagaattgtgacgcctccacctattcacaaaagagggacttttgatcagaatgttccatgatttt |
402 |
Q |
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| T |
1177755 |
atcatgagactatggcctttatcgtatttagaattgtgacgcctccacctattcacaaaagagggacttttgatcagaatgttccatgatttt |
1177663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 10 - 402
Target Start/End: Original strand, 6840828 - 6841226
Alignment:
| Q |
10 |
gcacagaaaccatacagggaatcatcatacttagagtgacagaatgagggtgcagg-gggtataaggtggacctgtttagttgttgggttccatagaatc |
108 |
Q |
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| T |
6840828 |
gcacaaaaaccatacaaggaatcatcatatttaga-tcagagaatgagggtgcaggaggggatacggtgaacttgtttaactgttgggttccatagaatc |
6840926 |
T |
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| Q |
109 |
aagtgaccaaga---gttgaattcctataaaaagcttttaagaagaaaacaccattgcaattgccatatgtttcgattcggtctacgatttca---tcac |
202 |
Q |
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| T |
6840927 |
aagtgaccaagatttgttgaatgccaataaaaagcttttaaaaagaaaacaccattgcaattgccatatgattcaatcttgagtatggttttattgttag |
6841026 |
T |
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| Q |
203 |
caggaaagagggagcagaagtagatacgttccaactcctc---gccgccaccgtcacaggagagaagagtgatgtagggaggtttgaatccatcaatggg |
299 |
Q |
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| T |
6841027 |
caggaaagagggagtagaagcagatgcgctccacctcctcatggtcgaggtcgtcacaggagagaagagcgatatagggaggtctgaat---tcaatggg |
6841123 |
T |
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| Q |
300 |
tctgtgatagatcatgagactatggcctttatcgtatttagaattgtgacgcctccacctattcacaaaagagggacttttgatcagaatgttccatgat |
399 |
Q |
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| T |
6841124 |
tctgggaatgatcatgagactatggcctttacggttttcagaattgtgcagtttccacctattcacaaaatatggagttttgaaaagaatgttccaagat |
6841223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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