View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_19 (Length: 378)
Name: NF3238_low_19
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 369
Target Start/End: Original strand, 45580525 - 45580896
Alignment:
| Q |
16 |
cacttggagagattctggagaaaagcttattgtgctgtaatttacgactgcttgcttgcgatgaaaaatattaggatttcttctta-------------- |
101 |
Q |
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| T |
45580525 |
cacttggagagattctggagaaaagcttattgtgctgtaatttacgactgcttgcttgcgatgaaaaatattaggatttcttcttaagctttagatttat |
45580624 |
T |
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| Q |
102 |
-------tagtcgtcaggattattgtcatattatttttgtttgtatgggctcgtgcgtttgcttttcaccacgcaatttgctatttagacccctatattg |
194 |
Q |
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| T |
45580625 |
ttatttatagtcgtcaggattattgtcatattatttttgtttgtatgggctcgtgcgtttgcttttcaccacgcaatttgctatttagacccctatattg |
45580724 |
T |
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| Q |
195 |
gaaattacattctcatgctatgaaaagttatcttccacttgttacctatcagtagatacattcccatatgtcccataatacctcatgtgttattattgat |
294 |
Q |
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| T |
45580725 |
gaaattacattctcatgctatgagaagttatcttccactcgttacctatcagtagatacattcccatatgtcccataatacctcatgtgttattattgat |
45580824 |
T |
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| Q |
295 |
ttgaaccttcataaacttgaactatatgaagagnnnnnnnnncactattcttcctttaatagttgatcttcatct |
369 |
Q |
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| T |
45580825 |
ttgaaccttcataaacttgaactatatgaaga---aaaaaaacactattcttcctttaatagttgatcttcatct |
45580896 |
T |
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