View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3238_low_2 (Length: 673)

Name: NF3238_low_2
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3238_low_2
NF3238_low_2
[»] chr1 (1 HSPs)
chr1 (21-657)||(42514404-42515065)


Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 21 - 657
Target Start/End: Complemental strand, 42515065 - 42514404
Alignment:
Q  21 ctgtgaacagcgtttcgaatttaagtac--ggcgtatccttgtcgtttttgataagatcaacgttaaaaattgaaatcattctgtgtcacagtattgcaa 118  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42515065 ctgtgaacagcgtttcgaatttaagtacacggcgtatccttgtcgtttttgataagatcaacgttaaaaattgaaatcattctgtgtcacagtattgcaa 42514966  T
Q  119 atgtcgtttttctttcaaatttgttaaag--------------------ttgctggtaattttaagattatttgaaaaaatatgttaggattgtgcaaaa 198  Q
    |||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42514965 atgtcgtttttctttcaaatttgttaaagaacttttataatacttaactttgctggtaattttaagattatttgaaaatatatgttaggattgtgcaaaa 42514866  T
Q  199 taaaaacaatgaacatggtacatttacatgtaaaaatattgtttcttgataaatatctttagaaaaatgtgtaacatactcataaagagatattt-attt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||    
T  42514865 taaaaacaatgaacatggtacatttacatgtaaaaatattgtttcttgataaatctctttagaaaaatgtgtaacatactcataaagagatgttttaatt 42514766  T
Q  298 tgattgtagtaatcctgatttgaaaaattggtcgagtatggcgacacgcatttaatggtttgagataagattgattaaatatagatgacatatctgtcag 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42514765 tgattgtagtaatcctgatttgaaaaattggtcgagtatggcgacacgcatttaatggtttgagataagattgattaaatatagatgacatatctgtcag 42514666  T
Q  398 ttaatctcattaatcattttcatgttttgaataaaatacgttgtcgattctccccttcctctgaaacacgtggatttctggtgtgtgtcctatccctaca 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42514665 ttaatctcattaatcattttcatgttttgaataaaatacgttgtcgattctccccttcctctgaaacacgtggatttctggtgtgtgtcctatccctaca 42514566  T
Q  498 ataatcaatacgtagtagatgcaggggccattgcatgtccattattatcacatgccaatgtcaattctggatgtggatcc--atagcatataccttaatg 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||    
T  42514565 ataatcaatacgtagtagatgcaggggccattgcatgtccattattatcacatgccaatgtcaattctggatgtggatccatatagcatataccctaatg 42514466  T
Q  596 ttttatttttgctgaaatctcatgcttttattttgtggtcaacactttcatcccattctcta 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42514465 ttttatttttgctgaaatctcatgcttttattttgtggtcaacactttcatcccattctcta 42514404  T

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