View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_20 (Length: 372)
Name: NF3238_low_20
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 39168010 - 39167822
Alignment:
| Q |
17 |
gtaaatactaattactatgtttctctaatttcccatgtgttgtagcagattctgtacattgaaatctttttacaggacccagctcagtaaagcttaccag |
116 |
Q |
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| T |
39168010 |
gtaaatactaattactatgtttctctaatttcccatgtgttgtagcagattctgtacattgaaatctttttacaggacccagctcagtaaagcttaccag |
39167911 |
T |
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| Q |
117 |
actgctggggtgctctttgaagtgctttgtgccgttaacaagactgagaaggtcgaagaagtagctcctgaggttagtctccattcata |
205 |
Q |
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| T |
39167910 |
actgctggggtgctctttgaagtgctttgtgccgttaacaagactgagaaggtcgaagaagtagctcctgaggttagtctccagtcata |
39167822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 39167757 - 39167666
Alignment:
| Q |
270 |
ctggaggcattttttgtgtttgcagattattgccgctgccagagatgtccaggaaaacctggagatttatgcacattcatataatattcttc |
361 |
Q |
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| T |
39167757 |
ctggaggcattttttgtgtttgcagattattgccgctgccagagatgtccaggaaaacctggagatttatgcacattcatataatattcttc |
39167666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 43965427 - 43965335
Alignment:
| Q |
103 |
gtaaagcttaccagactgctggggtgctctttgaagtgctttgtgccgttaacaagactgagaaggtcgaagaagtagctcctgaggttagtc |
195 |
Q |
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| T |
43965427 |
gtaaagcttaccagaccgccggtgtgctttttgaagtgctttgtgctgttaacaagactgagaaagtcgaagaagttgctcctgaggttagtc |
43965335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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