View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_25 (Length: 360)
Name: NF3238_low_25
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 360
Target Start/End: Complemental strand, 29561967 - 29561623
Alignment:
| Q |
15 |
aacctgtgttcaggacattgcaagactattgtaagaagaatagtggagcaagttagagttgagacagaacaatggtcccaaatgcaggagatgctaggcc |
114 |
Q |
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| T |
29561967 |
aacctgtgttcaggacattgcaagactattgtaagaagaatagtggagcaagttagagttgagacagaacaatggtcccaaatgcaggagatgctaggcc |
29561868 |
T |
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| Q |
115 |
aggtgagggaagagatggaagaactgcaggcttcacgagatttctggaaagatcgcgccttgcattctgattctcaaatccaatctctacacaatgatgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561867 |
aggtgagggaagagatggaagaactgcaggcttcacgagatttctggaaagatcgcgccttgcattctgattctcaaatccaatctctacacaatgatgt |
29561768 |
T |
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| Q |
215 |
aagataaagtttattcttacattcaacaacctcttaggaccgtgtttacttctagtcgtttatttctggcgcttcctgtttgcattaacttttgtatttt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29561767 |
aagataaagtttattcttacattcaacaacctcttaggaccgtgtttacttctagtcgtttatttctggcgcttcctgtttgcattaac-tttgtatttt |
29561669 |
T |
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| Q |
315 |
ctttcacacaggtgcaagagtggaaacaaagggctctttcatcaga |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561668 |
ctttcacacaggtgcaagagtggaaacaaagggctctttcatcaga |
29561623 |
T |
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