View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_31 (Length: 290)
Name: NF3238_low_31
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_31 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: scaffold0722 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 2968 - 2707
Alignment:
| Q |
18 |
cttaaacctttcaaacaactctttgaatggtagtttcccgtctgattttccttctctaaacaatcttaaattcctcaacatctcaaacaacaacttcaaa |
117 |
Q |
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| T |
2968 |
cttaaacctttcaaacaactctttgaatggtagtttcccgtctgattttccttctctaaacaatcttaaattcctcaacatctcaaacaacaacttcaaa |
2869 |
T |
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| Q |
118 |
tcttcaacttctctaaacaacttcatcaagaaatttggaaaatcatcattcattcataacaacttcaatctcaaccactacaatacaaccaaaaaaccaa |
217 |
Q |
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| T |
2868 |
tcttcaacttctctaaacaacttcatcaagaaatttggaaaatcatcattcattcataacaacttcaatctcaaccactacaatactaccaaaaaaccaa |
2769 |
T |
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| Q |
218 |
acattcattcaaattcaaattcaatatcaactctaaaacaccgccaccaacaacaacttcat |
279 |
Q |
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| T |
2768 |
acattcattcaaattcaaattcaatatcaactctaaaacaccaccaccaacaacaacttcat |
2707 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 35882191 - 35882278
Alignment:
| Q |
28 |
tcaaacaactctttgaatggtagtttcccgtctgattttccttctctaaacaatcttaaattcctcaacatctcaaacaacaacttca |
115 |
Q |
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| T |
35882191 |
tcaaacaacactttaactggtaatttcccttctgattttcctccacttcacaatcttaaatttctcaacatttcacaaaacaacttca |
35882278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 24456392 - 24456479
Alignment:
| Q |
28 |
tcaaacaactctttgaatggtagtttcccgtctgattttccttctctaaacaatcttaaattcctcaacatctcaaacaacaacttca |
115 |
Q |
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| T |
24456392 |
tcaaacaacactttaactggtaatttcccttctgattttcctccacttcacaatcttaaatttctcaacatttcacaaaacaacttca |
24456479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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