View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3238_low_32 (Length: 280)

Name: NF3238_low_32
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3238_low_32
NF3238_low_32
[»] chr8 (1 HSPs)
chr8 (72-264)||(31973161-31973353)
[»] chr2 (7 HSPs)
chr2 (72-264)||(39832977-39833169)
chr2 (72-264)||(19046944-19047136)
chr2 (72-264)||(26239902-26240094)
chr2 (151-264)||(19045569-19045683)
chr2 (152-264)||(39834721-39834834)
chr2 (101-146)||(19045850-19045895)
chr2 (101-146)||(39834508-39834553)
[»] chr1 (3 HSPs)
chr1 (72-264)||(29995917-29996109)
chr1 (151-264)||(29997373-29997487)
chr1 (101-146)||(29997161-29997206)
[»] chr6 (9 HSPs)
chr6 (75-264)||(16273259-16273448)
chr6 (72-264)||(22824564-22824757)
chr6 (83-264)||(28321333-28321514)
chr6 (151-264)||(16274712-16274826)
chr6 (151-264)||(22825783-22825897)
chr6 (151-264)||(28319961-28320076)
chr6 (101-146)||(16274500-16274545)
chr6 (101-146)||(28320242-28320287)
chr6 (101-146)||(22825571-22825616)
[»] scaffold0038 (3 HSPs)
scaffold0038 (72-264)||(112442-112634)
scaffold0038 (151-264)||(111067-111182)
scaffold0038 (101-146)||(111348-111393)
[»] chr3 (9 HSPs)
chr3 (72-260)||(32967988-32968176)
chr3 (72-263)||(42394540-42394731)
chr3 (72-264)||(10024380-10024572)
chr3 (143-264)||(10023177-10023299)
chr3 (151-264)||(42396012-42396126)
chr3 (183-264)||(32969797-32969878)
chr3 (101-146)||(42395800-42395845)
chr3 (101-146)||(10023458-10023503)
chr3 (101-146)||(32969546-32969591)
[»] scaffold0061 (1 HSPs)
scaffold0061 (72-264)||(40893-41085)
[»] scaffold0017 (1 HSPs)
scaffold0017 (72-264)||(157700-157892)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 72 - 264
Target Start/End: Original strand, 31973161 - 31973353
Alignment:
Q  72 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31973161 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactctaattatttttagcaaacatgtcgtataagttaagagtaaaaa 31973260  T
Q  172 ttgactcctaaaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  31973261 ttgactcctaaaattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 31973353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 72 - 264
Target Start/End: Original strand, 39832977 - 39833169
Alignment:
Q  72 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39832977 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 39833076  T
Q  172 ttgactcctaaaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  39833077 ttgactcctaaaattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 39833169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 72 - 264
Target Start/End: Complemental strand, 19047136 - 19046944
Alignment:
Q  72 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  19047136 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaagttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 19047037  T
Q  172 ttgactcctaaaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  19047036 ttgactcctaaaattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 19046944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 72 - 264
Target Start/End: Complemental strand, 26240094 - 26239902
Alignment:
Q  72 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 171  Q
    |||| |||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26240094 gtgtgtatacagagttaaggggtgtctaataatatggaataagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaaaagtaaaaa 26239995  T
Q  172 ttgactcctaaaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||| || |||||    
T  26239994 ttgactcctaaaattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatttgatttaatattaac 26239902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 19045683 - 19045569
Alignment:
Q  151 cgtataagttaagagtaaaaattgactccta-aaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt 249  Q
    |||||||| ||||||||||||| || ||||| |||||||||||||||||| |||||||||| ||| ||| ||  ||| ||||||||||||||||||||||    
T  19045683 cgtataagctaagagtaaaaatagagtcctataaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatt 19045584  T
Q  250 tgattttatcttaac 264  Q
    |||||||||||||||    
T  19045583 tgattttatcttaac 19045569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 39834721 - 39834834
Alignment:
Q  152 gtataagttaagagtaaaaattgactccta-aaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacattt 250  Q
    ||||||| |||||||||||||  | ||||| |||||||||||||||||| |||||||||| ||| ||| ||  ||| |||||||||||||||||||||||    
T  39834721 gtataagctaagagtaaaaatatagtcctataaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacattt 39834820  T
Q  251 gattttatcttaac 264  Q
    ||||||||||||||    
T  39834821 gattttatcttaac 39834834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 19045895 - 19045850
Alignment:
Q  101 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 146  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  19045895 taatatggaacaagtgtaaagttgactcttattatttttagcaaac 19045850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 39834508 - 39834553
Alignment:
Q  101 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 146  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  39834508 taatatggaacaagtgtaaagttgactcttattatttttagcaaac 39834553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 72 - 264
Target Start/End: Original strand, 29995917 - 29996109
Alignment:
Q  72 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29995917 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 29996016  T
Q  172 ttgactcctaaaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  29996017 ttgactcctaaaattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 29996109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 29997373 - 29997487
Alignment:
Q  151 cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt 249  Q
    |||||||| ||||||||||||| || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| ||||||||||||||||||||||    
T  29997373 cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatt 29997472  T
Q  250 tgattttatcttaac 264  Q
    |||||||||||||||    
T  29997473 tgattttatcttaac 29997487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 29997161 - 29997206
Alignment:
Q  101 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 146  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  29997161 taatatggaacaagtgtaaagttgactcttattatttttagcaaac 29997206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 75 - 264
Target Start/End: Original strand, 16273259 - 16273448
Alignment:
Q  75 tatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattg 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16273259 tatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattg 16273358  T
Q  175 actcctaaaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  16273359 actcctaaaattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 16273448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 72 - 264
Target Start/End: Original strand, 22824564 - 22824757
Alignment:
Q  72 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22824564 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 22824663  T
Q  172 ttgactcctaaaattctattggatttgaat-aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  22824664 ttgactcctaaaattctattggatttgaataaattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 22824757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 83 - 264
Target Start/End: Complemental strand, 28321514 - 28321333
Alignment:
Q  83 aaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28321514 aaggtaaggggtgtctaataatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaa 28321415  T
Q  183 aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    |||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  28321414 aattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 28321333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 16274712 - 16274826
Alignment:
Q  151 cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt 249  Q
    |||||||| ||||||||||||| || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| ||||||||||||||||||||||    
T  16274712 cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatt 16274811  T
Q  250 tgattttatcttaac 264  Q
    |||||||||||||||    
T  16274812 tgattttatcttaac 16274826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 22825783 - 22825897
Alignment:
Q  151 cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt 249  Q
    |||||||| ||||||||||||| || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| |||| |||||||||||||||||    
T  22825783 cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaactttaagatcaattcaaacatt 22825882  T
Q  250 tgattttatcttaac 264  Q
    |||||||||||||||    
T  22825883 tgattttatcttaac 22825897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 28320076 - 28319961
Alignment:
Q  151 cgtataagttaagagtaaaaatt-gactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacat 248  Q
    |||||||| |||||||||||| | || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| |||||||||||||||||||||    
T  28320076 cgtataagctaagagtaaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacat 28319977  T
Q  249 ttgattttatcttaac 264  Q
    ||||||||||||||||    
T  28319976 ttgattttatcttaac 28319961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 16274500 - 16274545
Alignment:
Q  101 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 146  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  16274500 taatatggaacaagtgtaaagttgactcttattatttttagcaaac 16274545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 28320287 - 28320242
Alignment:
Q  101 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 146  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  28320287 taatatggaacaagtgtaaagttgactcttattatatttagcaaac 28320242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 22825571 - 22825616
Alignment:
Q  101 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 146  Q
    ||||||| ||||||||||||| |||||||||||||||||| |||||    
T  22825571 taatatgaaacaagtgtaaagttgactcttattatttttatcaaac 22825616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 72 - 264
Target Start/End: Complemental strand, 112634 - 112442
Alignment:
Q  72 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  112634 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaagttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 112535  T
Q  172 ttgactcctaaaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  112534 ttgactcctaaaattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 112442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 111182 - 111067
Alignment:
Q  151 cgtataagttaagagtaaaaatt-gactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacat 248  Q
    |||||||| |||||||||||| | || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| |||| ||||||||||||||||    
T  111182 cgtataagctaagagtaaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaactttaagatcaattcaaacat 111083  T
Q  249 ttgattttatcttaac 264  Q
    ||||||||||||||||    
T  111082 ttgattttatcttaac 111067  T

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Target: scaffold0038; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 111393 - 111348
Alignment:
Q  101 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 146  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  111393 taatatggaacaagtgtaaagttgactcttattatatttagcaaac 111348  T

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Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 32967988 - 32968176
Alignment:
Q  72 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32967988 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 32968087  T
Q  172 ttgactcctaaaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatct 260  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  32968088 ttgactcctaaaattctattagatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatct 32968176  T

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Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 72 - 263
Target Start/End: Original strand, 42394540 - 42394731
Alignment:
Q  72 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  42394540 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaagttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 42394639  T
Q  172 ttgactcctaaaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaa 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  42394640 ttgactcctaaaattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaa 42394731  T

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Target: chr3; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 72 - 264
Target Start/End: Complemental strand, 10024572 - 10024380
Alignment:
Q  72 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 171  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  10024572 gtgtgtatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttactatttttaacaaacatgtcgtataagttaagagtaaaaa 10024473  T
Q  172 ttgactcctaaaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||    
T  10024472 ttgactcctaaaattctattggatttgaataattatattttcaataataatcacaacttttagatcaattcaaacatttgatttcatcttaac 10024380  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 10023299 - 10023177
Alignment:
Q  143 aaacatgtcgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaatt 241  Q
    ||||||| |||||||| ||||||||||||| || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| ||||||||||||||    
T  10023299 aaacatgacgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatt 10023200  T
Q  242 caaacatttgattttatcttaac 264  Q
    ||| |||||||||||||||||||    
T  10023199 caagcatttgattttatcttaac 10023177  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 42396012 - 42396126
Alignment:
Q  151 cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt 249  Q
    |||||||| ||||||||||||| || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| ||||||||||||||||||||||    
T  42396012 cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatt 42396111  T
Q  250 tgattttatcttaac 264  Q
    |||||||||||||||    
T  42396112 tgattttatcttaac 42396126  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 32969797 - 32969878
Alignment:
Q  183 aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    ||||||||||||||||| |||||||||| ||| ||| ||  ||| |||||||||||||||||||||||||||||||||||||    
T  32969797 aattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatttgattttatcttaac 32969878  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 42395800 - 42395845
Alignment:
Q  101 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 146  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  42395800 taatatggaacaagtgtaaagttgactcttattatttttagcaaac 42395845  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 10023503 - 10023458
Alignment:
Q  101 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 146  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  10023503 taatatagaacaagtgtaaagttgactcttattatttttagcaaac 10023458  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 32969546 - 32969591
Alignment:
Q  101 taatatggaacaagtgtaaaggtgactcttattatttttagcaaac 146  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||||    
T  32969546 taatatggaagaagtgtaaagttgactcttattattttttgcaaac 32969591  T

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Target: scaffold0061 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 72 - 264
Target Start/End: Complemental strand, 41085 - 40893
Alignment:
Q  72 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 171  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  41085 gtgtatatacaaaggtaaggggtttctaataatatggaacaagtgtaaaggtgactcttattatttt-agcaaacatgtcgtataagttaagagtcaaaa 40987  T
Q  172 ttgactcctaaaattctattggatttgaataattatattttc-aataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  40986 tcgactcctaaaattctattggatttgaataattatattttcaaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 40893  T

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Target: scaffold0017 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 72 - 264
Target Start/End: Original strand, 157700 - 157892
Alignment:
Q  72 gtgtatatacaaaggtaaggggtgtctaataatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaa 171  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  157700 gtgtatatacaaaggtaaggggtttctaataatatggaacaagtgtaaaggtgactcttattatttt-agcaaacatgtcgtataagttaagagtcaaaa 157798  T
Q  172 ttgactcctaaaattctattggatttgaataattatattttc-aataataaatacagcttttagatcaattcaaacatttgattttatcttaac 264  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  157799 tcgactcctaaaattctattggatttgaataattatattttcaaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 157892  T

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