View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3238_low_33 (Length: 280)

Name: NF3238_low_33
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3238_low_33
NF3238_low_33
[»] chr1 (2 HSPs)
chr1 (2-100)||(51914623-51914721)
chr1 (158-262)||(51914503-51914607)
[»] chr3 (1 HSPs)
chr3 (169-220)||(30543704-30543755)
[»] chr2 (1 HSPs)
chr2 (182-236)||(18952301-18952355)
[»] chr6 (1 HSPs)
chr6 (162-219)||(8000361-8000418)
[»] chr7 (1 HSPs)
chr7 (191-231)||(35707885-35707925)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 51914721 - 51914623
Alignment:
Q  2 tcgagagagaagaacggttcttgtccaaaaaacacaaataacggctaaagtatcaccaagcaaattcaattttaaaaaattaaatacaaatcaaatatc 100  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  51914721 tcgagagcgaacaacggttcttgtccaaaaaacacaaataacggttaaagtatcaccaagcaaattcaattttaaaaaattaaatacaaataaaatatc 51914623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 51914607 - 51914503
Alignment:
Q  158 tctcgtgagattcaaatggacggtaaactctcttaagagttttaatgttgttgcatgtccaaagttggactcgagctcataaagttaagatagaagagac 257  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| |||||| |||    
T  51914607 tctcgtaagatttaaatggacggcaaactctcttaagagttttaatgtttttgcatgtctaaagctggactcgagctcataaagttaaggtagaagtgac 51914508  T
Q  258 tcgca 262  Q
    |||||    
T  51914507 tcgca 51914503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 30543704 - 30543755
Alignment:
Q  169 tcaaatggacggtaaactctcttaagagttttaatgttgttgcatgtccaaa 220  Q
    |||||| ||||| ||||||| ||| |||||||||||||||||||| ||||||    
T  30543704 tcaaatagacggcaaactcttttaggagttttaatgttgttgcatatccaaa 30543755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 18952355 - 18952301
Alignment:
Q  182 aaactctcttaagagttttaatgttgttgcatgtccaaagttggactcgagctca 236  Q
    ||||| |||||||||||||||||||| |||||| | ||||||||| |||| ||||    
T  18952355 aaactttcttaagagttttaatgttgctgcatgcctaaagttggattcgaactca 18952301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 8000361 - 8000418
Alignment:
Q  162 gtgagattcaaatggacggtaaactctcttaagagttttaatgttgttgcatgtccaa 219  Q
    |||||| | |||||||||| ||||||| || ||||||||||| ||||||||| |||||    
T  8000361 gtgagacttaaatggacggcaaactcttttgagagttttaatattgttgcatatccaa 8000418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 35707925 - 35707885
Alignment:
Q  191 taagagttttaatgttgttgcatgtccaaagttggactcga 231  Q
    ||||| |||||| ||||||||||||||||||||||| ||||    
T  35707925 taagaattttaacgttgttgcatgtccaaagttggattcga 35707885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University