View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_36 (Length: 267)
Name: NF3238_low_36
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_36 |
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| [»] scaffold0432 (2 HSPs) |
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Alignment Details
Target: scaffold0432 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 6008 - 6158
Alignment:
| Q |
86 |
taacttttttaattaagagctagctaagtccattagttttaaattaatatcttacgtttctgattgtttaattttttggtttagcacgtggtccacttcg |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
6008 |
taacttttttaattaagagctagctaagtccattagttttaaattaatatcttacgtttctgattgtttaattttttggtttagc---tcgtccacttcg |
6104 |
T |
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| Q |
186 |
gacactgcacaccttcatcatatggtactacacatgtagatttcatgggttata |
239 |
Q |
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|||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
6105 |
gacattgcacaccttcatcatataatactacacatgcagatttcatgggttata |
6158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 5951 - 6021
Alignment:
| Q |
3 |
acagtaaaccatgaataaatgcaattaacatgcaatcttatagaataacaattgtcataacttttttaatt |
73 |
Q |
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| T |
5951 |
acagtacaccatgaataaatgaagttaacatgcaatcttatagaataacaattgtcataacttttttaatt |
6021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 86 - 252
Target Start/End: Original strand, 9812245 - 9812410
Alignment:
| Q |
86 |
taacttttttaattaagagctagctaagtccattagttttaaattaatatcttacgtttctgattgtttaatttt--ttggtttagcacgtggtccactt |
183 |
Q |
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| T |
9812245 |
taacttttttaattaagagctaactaagtccattagtttaaaattaatatcttacgtttctgattatctcttttaaattaatttat---gtggtccattt |
9812341 |
T |
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| Q |
184 |
cggacactgcacaccttcatcatatggtactacacatgtagatttcatgggttatattaaagtagtatt |
252 |
Q |
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| T |
9812342 |
cggacattgcacaccttcatcatatggtactacacgtgtagatttcatgggttatattaaagtagtatt |
9812410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 9826643 - 9826769
Alignment:
| Q |
86 |
taacttttttaattaagagctagctaagtccattagttttaaattaatatcttacgtttctgattgtttaattttttggtttagcacgtggtccacttcg |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||| | ||||||| | |
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| T |
9826643 |
taacttttttaattaagagctagctaagtccattagttttaaattaatatcctaagtttctggttgttgaattttttggtttagc---tcatccactttg |
9826739 |
T |
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| Q |
186 |
gacactgcacaccttcatcatatggtacta |
215 |
Q |
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| T |
9826740 |
gccattgcacaccttcatcatatggtacta |
9826769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 9751625 - 9751775
Alignment:
| Q |
86 |
taacttttttaattaagagctagctaagtccattagttttaaattaatatcttacgtttctgattgtttaattttttggtttagcacgtggtccacttcg |
185 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |||||||||||| | | ||||||| | |
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| T |
9751625 |
taacttttttaattaagagctagccaagtccattagttttaaattaatatgccaagtttctgattgttggattttttggttttg---ttcatccactttg |
9751721 |
T |
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| Q |
186 |
gacactgcacaccttcatcatatggtactacacatgtagatttcatgggttata |
239 |
Q |
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| T |
9751722 |
gccattgcacaccttcatcatatggtactacacatgcatatttcatgggttata |
9751775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9812186 - 9812258
Alignment:
| Q |
1 |
acacagtaaaccatgaataaatgcaattaacatgcaatcttatagaataacaattgtcataacttttttaatt |
73 |
Q |
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| T |
9812186 |
acacagtaaaccatgaataaatgaaattaacatgcaatattatagaataacaattgtcataacttttttaatt |
9812258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 9751570 - 9751638
Alignment:
| Q |
5 |
agtaaaccatgaataaatgcaattaacatgcaatcttatagaataacaattgtcataacttttttaatt |
73 |
Q |
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|||| ||||||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
9751570 |
agtataccatgaataagtgaaattaacattcaatcttaaagaataacaattgtcataacttttttaatt |
9751638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 9826588 - 9826656
Alignment:
| Q |
5 |
agtaaaccatgaataaatgcaattaacatgcaatcttatagaataacaattgtcataacttttttaatt |
73 |
Q |
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| T |
9826588 |
agtataccatgaataagtgaaattaacatgcaatcttaaagaataacaatcgtcataacttttttaatt |
9826656 |
T |
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