View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_38 (Length: 264)
Name: NF3238_low_38
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 49563475 - 49563729
Alignment:
| Q |
4 |
acattttggggagttgagaagagctctgagacggtggcagtgaatcatttggaggcggtggcagtgttccctcagcgtctgaggaggcgctactgatatt |
103 |
Q |
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| T |
49563475 |
acattttggggagttgagaagagctctgagacggtggcagtgaatcatttggaggcggtggcagtgttacctcagcgtctgagg---cgctactgatatt |
49563571 |
T |
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| Q |
104 |
atgggacctaagggtgttcctcggtcagattgggtttggttctggtcaaactcattgctactactcaaaatatttgtaacccccgaatggcttggtgtat |
203 |
Q |
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| T |
49563572 |
atgggacctaagggtgttcctcggtcagattgggtttggttttggtcaaactcattgctactcctcaaaatatttgtaaccccctaatggcttggtgt-- |
49563669 |
T |
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| Q |
204 |
cgtaactccttattactcatgtttgagagttacgccctgatcggcctggatgtatcgtaac |
264 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49563670 |
-gtaactccttattactcatgttcgagagttacgccctgatcggcctggatgtatcgtaac |
49563729 |
T |
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