View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3238_low_39 (Length: 255)
Name: NF3238_low_39
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 41469718 - 41469492
Alignment:
| Q |
19 |
aggtggaacttttaatttccaaatttcaccccaaaaaccatttatgtgcaaatgcgacatatctacgatctcttctacacaaactcgataagcactccta |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
41469718 |
aggtggaacttttaatttccaaattccaccccaaaaaccgtttgtgtgcaaatgcgacatatctgcgatctcttccacacaaactcggtaagcactccta |
41469619 |
T |
|
| Q |
119 |
accgaatattgtccatttttctccggtttccaaacaagcttatcctcattcacttgcagaaacaaaggcgtattcagaatttgatgagctgttcctgcct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41469618 |
accgaatattgtccatttttctccggtttccaaacaagcttatcctcattcacttgcagaaacaaaggcgtattcagaatttgctgagctgttcctgcct |
41469519 |
T |
|
| Q |
219 |
caaaaatacatctgaaaagtggttcat |
245 |
Q |
| |
|
||||||||||| ||| ||||||||||| |
|
|
| T |
41469518 |
caaaaatacatatgacaagtggttcat |
41469492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 4738276 - 4738236
Alignment:
| Q |
103 |
tcgataagcactcctaaccgaatattgtccatttttctccg |
143 |
Q |
| |
|
||||||||||||| ||||||| || |||||||||||||||| |
|
|
| T |
4738276 |
tcgataagcactcttaaccgagtaatgtccatttttctccg |
4738236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 11594794 - 11595013
Alignment:
| Q |
19 |
aggtggaacttttaatttccaaatttcaccccaaaaaccatttatgtgcaaatgcgacatatctacg-------atctcttctacacaaactcgataagc |
111 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| || | ||| || |||||||| |||||||| || ||||| |
|
|
| T |
11594794 |
aggtggaacttttaaattccaaattccaccccaaaaaccatttctgtgcaaatgagaaacatccacagaccacaatctcttccacacaaacccggtaagc |
11594893 |
T |
|
| Q |
112 |
actcctaaccgaatattgtccatttttctccggtttccaaacaagcttatcctcattcacttgcagaaacaaaggcgtattcagaatttgatgagctgtt |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||||||||| || ||||||| || ||||| |||| |||| |
|
|
| T |
11594894 |
actcctaaccgaatattgtccattcttctcgggtttccaaaccattttatcctcattcacttgcagaaataatggcgtatccaatatttgttgagatgtt |
11594993 |
T |
|
| Q |
212 |
cctgcctcaaaaatacatct |
231 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
11594994 |
cctgcctcaaaaataaatct |
11595013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 11108642 - 11108854
Alignment:
| Q |
19 |
aggtggaacttttaatttccaaatttcaccccaaaaaccatttatgtgcaaatgcgacatatctacgatctcttctacacaaactcgataagcactccta |
118 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| |||||||||| |||||||||| || | ||| || |||||||| ||| ||| || |||| ||||||| |
|
|
| T |
11108642 |
aggtggaacttttaaattccaaattccacccgaaaaaccattcctgtgcaaatgagaaacatccacaatctcttccacaaaaatccggtaagtactccta |
11108741 |
T |
|
| Q |
119 |
accgaatattgtccatttttctccggtttccaaacaagcttatcctcattcacttgcagaaacaaaggcgtattcagaatttgatgagctgttcctgcct |
218 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||||| | |||||||||||||| |||| |||| || ||||||| || ||||| |||||||| ||||||| |
|
|
| T |
11108742 |
accgaatattgttcattcttctcgggtttccaaaccatcttatcctcattcagttgcggaaataacggcgtatccaatatttgttgagctgtacctgcct |
11108841 |
T |
|
| Q |
219 |
caaaaatacatct |
231 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
11108842 |
caaaaataaatct |
11108854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University