View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_41 (Length: 251)
Name: NF3238_low_41
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37235315 - 37235079
Alignment:
| Q |
1 |
aaaaacaaccaaatgagcagacaatagtgttttttcttactgagaactaatacaagatataataaccaactatcaaaacatcatttcttgagagacatga |
100 |
Q |
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| T |
37235315 |
aaaaacaaccaaatgagcagacaatagtgttttttcttactgagaactaatacaagatataataaccaactatcaaaacatcatttcttgagagacatga |
37235216 |
T |
|
| Q |
101 |
gaaaaaatgtttgagtaacacatcattactgaccttgaatcccactttgttatcaagacaagaatgccaatcggacttcatttctttcaaaggcacccga |
200 |
Q |
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| T |
37235215 |
gaaaaaatgtttgattaacacatcattactgaccttgaatcccactttgttatcaagacaagaatgccaatcggacttcatttctttcaaaggcacccga |
37235116 |
T |
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| Q |
201 |
tcatgaggtctggcattagtaacatttagcatgaatt |
237 |
Q |
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| T |
37235115 |
tcatgaggtctggcattagtaacatttagcatgaatt |
37235079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 28306796 - 28307032
Alignment:
| Q |
1 |
aaaaacaaccaaatgagcagacaatagtgttttttcttactgagaactaatacaagatataataaccaactatcaaaacatcatttcttgagagacatga |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28306796 |
aaaaacaaccaaatgagcagacaataatgttttttcttactgagaactaatacaagatataataaccaactatcaaaacatcatttcttgagagacatga |
28306895 |
T |
|
| Q |
101 |
gaaaaaatgtttgagtaacacatcattactgaccttgaatcccactttgttatcaagacaagaatgccaatcggacttcatttctttcaaaggcacccga |
200 |
Q |
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| T |
28306896 |
gaaaaaatgtttgattaatacatcattactgaccttgaatcccactttgttatcaagacaagaatgccaatcggacttcatttctttcaaaggcacccga |
28306995 |
T |
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| Q |
201 |
tcatgaggtctggcattagtaacatttagcatgaatt |
237 |
Q |
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| T |
28306996 |
tcatgaggtctggcattagtaacatttagcatgaatt |
28307032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 17040905 - 17040986
Alignment:
| Q |
132 |
accttgaatcccactttgttatcaagacaagaatgccaatcggacttcatttctttcaaaggcacccgatcatgaggtctgg |
213 |
Q |
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||||| ||||| ||||||||||||||||||| |||||| || | ||||||||||||||||||||| || ||||| ||||||| |
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| T |
17040905 |
accttaaatccaactttgttatcaagacaagcatgccagtcagccttcatttctttcaaaggcactcggtcatggggtctgg |
17040986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 33446263 - 33446187
Alignment:
| Q |
132 |
accttgaatcccactttgttatcaagacaagaatgccaatcggacttcatttctttcaaaggcacccgatcatgagg |
208 |
Q |
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||||||| ||| |||||||| |||||||||| ||||||||| | |||||| ||||||||||| || ||||||||||| |
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| T |
33446263 |
accttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaactcgatcatgagg |
33446187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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