View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_46 (Length: 230)
Name: NF3238_low_46
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 32124309 - 32124487
Alignment:
| Q |
19 |
tgaacagtatagatgtgtaataacagtaaagaggaagaaggaagggttagtacgaacctgtaatggtgccatgaacaattgtaccgttcttgagctcgat |
118 |
Q |
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| T |
32124309 |
tgaacagtatagatgtgtaataacagtaaagaggaagaaggaagggttagtacgaacctgtaatggtgccatgaacaattgtaccgttcttgagctcgat |
32124408 |
T |
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| Q |
119 |
cgatacggtttcgttgttcaatttcatcagaaacctgttccgattttcaaagaaacattttcagcttaaaacgaaaatc |
197 |
Q |
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| T |
32124409 |
cgatacggtttcgttgttcaatttcatcagaaacctgttccgattttcaaagaaacattttcagcttaaaacgaaaatc |
32124487 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 37778683 - 37778606
Alignment:
| Q |
74 |
acctgtaatggtgccatgaacaattgtaccgttcttgagctcgatcgatacggtttcgttgttcaatttcatcagaaa |
151 |
Q |
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| T |
37778683 |
acctgtaatggtgccatgaacaatagtgccattcttcaactcgattgagacggtttcgttgttcaacttcatgagaaa |
37778606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 26174712 - 26174769
Alignment:
| Q |
17 |
catgaacagtatagatgtgtaataacagtaaagaggaagaaggaagggttagtacgaa |
74 |
Q |
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| T |
26174712 |
catgaagagaatagatgtttgataacagtaaagtggaagaagtaagggttagtacgaa |
26174769 |
T |
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