View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_48 (Length: 219)
Name: NF3238_low_48
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 54646956 - 54647156
Alignment:
| Q |
1 |
gcctacaatgaaattgagcttaccaaggaacctttgggatcatctgaagtaagaatagcagatacagcaacatgtttgatcttcttctgatttgtgaaac |
100 |
Q |
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| T |
54646956 |
gcctacaatgaaattgagcttaccaaggaacctttgggatcatctgaagtaagaatagcagatacagcaacatgtttgatcttcttctgatttgtgaaac |
54647055 |
T |
|
| Q |
101 |
gttcattcaactgatccgtgacccaggaactgttatggaagcttcctttgattctttctccnnnnnnngaaccttttttagaaattgaaaaatgggtgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54647056 |
gttcattcaactgatccgtgacccaggaactgttatggaagcttcctttgattctttctccaaaaaaagaaccttttttagaaattgaaaaatgggtgtt |
54647155 |
T |
|
| Q |
201 |
g |
201 |
Q |
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| T |
54647156 |
g |
54647156 |
T |
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