View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_5 (Length: 542)
Name: NF3238_low_5
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 39562369 - 39561854
Alignment:
| Q |
1 |
tatattactgtaagcttgatgagtggtaggaaaattttgcaatgttttctaataatagttaatgtacattatcacaactagtgagtttaattagataaga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39562369 |
tatattactgtaagcttgatgagtggtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgagtttaattagataaga |
39562270 |
T |
|
| Q |
101 |
atgccaactgagggttctagttttattcatggctgccaattgaggccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgttactt |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39562269 |
atgccaactgagggttctagttttattgatggctgccaattgaggccagcattcaagaactttagtcagtacaaaaaccttgcttattctaatgttactt |
39562170 |
T |
|
| Q |
201 |
ttggggtcccagttacggattgcattaagataccgtggattcataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgag |
300 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39562169 |
ttggggtcccagttatggattgcattaagatactgtggattcataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgag |
39562070 |
T |
|
| Q |
301 |
attctaaaggttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaact |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39562069 |
attctaaaggttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaggcacaact |
39561970 |
T |
|
| Q |
401 |
gagatattggatcaattttatactatacactatgttagtgctcaaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccaca |
500 |
Q |
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| T |
39561969 |
gagatattggatcaattttatactatacactatgttagtgctcaagg-------ataagagcagcttcctggaaagcatttccaatttaccttttccaca |
39561877 |
T |
|
| Q |
501 |
ctatataatgcatcacatacaac |
523 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
39561876 |
ctatataatgcatcacatacaac |
39561854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 523
Target Start/End: Complemental strand, 39567038 - 39566533
Alignment:
| Q |
9 |
tgtaagcttgatgagtggtaggaaaattttgca-atgttttctaataatagttaatgtacattatcacaacta-gtgagtttaattagataagaatgcca |
106 |
Q |
| |
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||||||||| |||||||||||||||||| | | |||||||| || ||| | |||||||||||| ||||||| ||||||||||| |||||| ||||||| |
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| T |
39567038 |
tgtaagcttaatgagtggtaggaaaattccgtacatgttttcaaa--ataat-aatgtacattattacaactaagtgagtttaatcagataaaaatgcca |
39566942 |
T |
|
| Q |
107 |
actgagggttctagttttattcatggctgccaattgaggccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgttacttttgggg |
206 |
Q |
| |
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||||||| |||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39566941 |
actgagg-ttctagctttattgatggctgtcaattgataccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgttacttttgggg |
39566843 |
T |
|
| Q |
207 |
tcccagttacggattgcattaagataccgtggattcataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgagattcta |
306 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39566842 |
tcccagttatggattgcattaagatactgtggattcataacccaataccatatcagaataacaagagccaaattggaaaatctagcctttcgagattcta |
39566743 |
T |
|
| Q |
307 |
aaggttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagata |
406 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
39566742 |
aaggttttctttaataagatataatcttctacacaatctcatgtgcatagtttaagattaagatggtattaatatattcacaaagagcacaacttagata |
39566643 |
T |
|
| Q |
407 |
ttggatcaattttatactatacactatgttagtgctcaaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacactatat |
506 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||| |||||||||| |
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| T |
39566642 |
ttggatcaattttatataatacactatgttagtgctcaa-------gaataagagcagcttcctggaaagcatttccagtttactttttgcacactatat |
39566550 |
T |
|
| Q |
507 |
aatgcatcacatacaac |
523 |
Q |
| |
|
||| ||||| ||||||| |
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|
| T |
39566549 |
aatacatcatatacaac |
39566533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 26 - 523
Target Start/End: Complemental strand, 39572532 - 39572049
Alignment:
| Q |
26 |
gtaggaaaattttgcaatgttttctaataatagttaatgtacattatcacaactagtgagtttaattagataagaatgccaactgagggttctagtttta |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39572532 |
gtaggaaaattttgcaatgttttctaataataattaatgtacattatcacaactagtgagtttaattagataagaatgccaactgagggttctagtttta |
39572433 |
T |
|
| Q |
126 |
ttcatggctgccaattgaggccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgttacttttggggtcccagttacggattgcat |
225 |
Q |
| |
|
|| |||| || | | || ||||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |
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|
| T |
39572432 |
ttgatgg-tgt-agtggaagccagcattcaagggttttagttagtacaaaaaccttggttattctaatattacttttggtgtcccagttatggattgcat |
39572335 |
T |
|
| Q |
226 |
taagataccgtggattcataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgagat-------tctaaaggttttcttt |
318 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||||||||||| || ||||||||||||| |||||||| |||| |||||||||||||| |
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| T |
39572334 |
taagatactgtggattcataacccaataccaaatcagactaacaataggaaaattggaaaatctagcctttcaagattctaaactctaaaggttttctac |
39572235 |
T |
|
| Q |
319 |
aataagatataatcttcaacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaattt |
418 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| | |||||||||| ||||| |||||||||| ||||| | |||||||||||| |||| ||||| |
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|
| T |
39572234 |
aataagatataatattcaacacaatctcatgtgcatgatataagattaagttggtagtaatatattcgcaaaatgaacaactgagatactggacaaattt |
39572135 |
T |
|
| Q |
419 |
tatactatacactatgttagtgctcaaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataatgcatcacat |
518 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||| | |
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|
| T |
39572134 |
tata------------ttagtgttcaa-------ggataagagcagcttcctgtaaagcatttccaatttactttttcaacactatataatacatcacct |
39572054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 311 - 509
Target Start/End: Complemental strand, 39560749 - 39560558
Alignment:
| Q |
311 |
ttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattgg |
410 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| | ||||||| || |||| |||| |||||||||||||||||||||| |||||||||||||| ||| |
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|
| T |
39560749 |
ttttctttaataatatataatcttcaacataatctgatgtgcatgattcaagaataagttggtattaatatattcacaaaaggcacaactgagatactgg |
39560650 |
T |
|
| Q |
411 |
atcaattttatactatacactatgttagtgctcaaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataat |
509 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |||| ||||||| || |||| |||||||||||||| |||||| |||||||||||| ||||| |
|
|
| T |
39560649 |
atcaattttatacaatatactatgttagtgttcaa-------agataagatcaacttcatggaaagcatttcctatttactttttccacactacataat |
39560558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 268 - 406
Target Start/End: Original strand, 39584617 - 39584755
Alignment:
| Q |
268 |
caagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagattaa |
367 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||| |||||||||| |||||||||| | | ||||| ||||||||||| |
|
|
| T |
39584617 |
caagagccaaattagaaaatctagcctttcgagatttacaaggttttctttagtaaaatataatcttgaacacaatctaatgcgcatgatttaagattaa |
39584716 |
T |
|
| Q |
368 |
gatggtattaatatattcacaaaaagcacaactgagata |
406 |
Q |
| |
|
| |||| | |||||||||||||| |||||||||||||| |
|
|
| T |
39584717 |
gttggtgtccatatattcacaaaaggcacaactgagata |
39584755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 268 - 419
Target Start/End: Original strand, 39580986 - 39581146
Alignment:
| Q |
268 |
caagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataag--atataatcttcaacacaatctc-------acgtgcatggtt |
358 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| | ||||||| || |
|
|
| T |
39580986 |
caagagcaaaattgtaaaatctagcctttcgagattctaaactttttctttaataaggtatatgatcttcaacacaatctcatgtgcaatgtgcatgatt |
39581085 |
T |
|
| Q |
359 |
taagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaatttt |
419 |
Q |
| |
|
|| |||||| |||||||||||||| |||||||||||||||||||||| | |||||||||| |
|
|
| T |
39581086 |
caatattaagttggtattaatatatgcacaaaaagcacaactgagatactagatcaatttt |
39581146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 267 - 398
Target Start/End: Original strand, 39574473 - 39574603
Alignment:
| Q |
267 |
acaagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataagat-ataatcttcaacacaatctcacgtgcatggtttaagatt |
365 |
Q |
| |
|
|||||| || |||||||||||||| |||||| |||||| || |||||||||||||| ||| | |||||| | ||||||| | ||||||| ||||||||| |
|
|
| T |
39574473 |
acaagatccgaattggaaaatccaccctttctagattccaa-ggttttctttaatatgattaaaatctttagaacaatctgatgtgcatg-tttaagatt |
39574570 |
T |
|
| Q |
366 |
aagatggtattaatatattcacaaaaagcacaa |
398 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| |
|
|
| T |
39574571 |
aatttggtattaaaatattcacaaaaagcacaa |
39574603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 470 - 523
Target Start/End: Original strand, 39581181 - 39581234
Alignment:
| Q |
470 |
tggaaagcatttccaatttaccttttccacactatataatgcatcacatacaac |
523 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
39581181 |
tggaaagcatttccacattactttttccacactatataatgcatcgcatacaac |
39581234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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