View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3238_low_51 (Length: 204)
Name: NF3238_low_51
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 53713051 - 53713227
Alignment:
| Q |
13 |
cacagatagatagcctcaatcggggttgcaccaaatgatccctttttaaataagaaaaacaaaaatattgatttgtgttaaaagagttttacatcggttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53713051 |
cacagatagatagcctcaatcggggttgcaccaaatgatccctttttaaataagaaaaacaaaaatattgatttgtgttaaaagagttttacatcgattg |
53713150 |
T |
|
| Q |
113 |
aatgagacaatcttcatctcacaaactgttttgtggggttgtgttagattcaatcacaattttttagatgatattaa |
189 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53713151 |
aatgagacaatcttcatctcacaaaccgttttatggaattgtgttagattcaatcacaattttttagatgatattaa |
53713227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 5398220 - 5398177
Alignment:
| Q |
140 |
gttttgtggggttgtgttagattcaatcacaattttttagatga |
183 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| |||||| |
|
|
| T |
5398220 |
gttttgtggggttgtgttagattcaaccacgatttttaagatga |
5398177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 16162979 - 16163024
Alignment:
| Q |
141 |
ttttgtggggttgtgttagattcaatcacaattttttagatgatat |
186 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| ||||||||| |
|
|
| T |
16162979 |
ttttgtggggttgtgttagactcaaccacaatttttaagatgatat |
16163024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 32908991 - 32908943
Alignment:
| Q |
140 |
gttttgtggggttgtgttagattcaatcacaattttttagatgatatta |
188 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| | ||||||||||| |
|
|
| T |
32908991 |
gttttgtggggttgtgttagactcaaccacaatttctaagatgatatta |
32908943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 36352198 - 36352150
Alignment:
| Q |
140 |
gttttgtggggttgtgttagattcaatcacaattttttagatgatatta |
188 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| ||||| ||||| |
|
|
| T |
36352198 |
gttttgtggggttgtgttaggttcaaccacaatttttaagatggtatta |
36352150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 20830774 - 20830828
Alignment:
| Q |
120 |
caatcttcatctcacaaactg-ttttgtggggttgtgttagattcaatcacaatt |
173 |
Q |
| |
|
||||| ||| ||||||||||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
20830774 |
caatcatcacctcacaaactgattttgtgaggttgtgttagactcaatcacaatt |
20830828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 26272385 - 26272317
Alignment:
| Q |
119 |
acaatcttcatctcacaaactg-ttttgtggggttgtgttagattcaatcacaattttttagatgatat |
186 |
Q |
| |
|
|||||| ||| ||||||| ||| |||||||||||||||||||| ||| |||||||| | ||||||||| |
|
|
| T |
26272385 |
acaatcgtcacctcacaagctgattttgtggggttgtgttagacccaaccacaatttctaagatgatat |
26272317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University