View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_6 (Length: 523)
Name: NF3238_low_6
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 87 - 513
Target Start/End: Complemental strand, 1503872 - 1503446
Alignment:
| Q |
87 |
aacaaccctaacatatcatttatacatatataagtgtagatggttctctgtagatggttctcaatgtacgtacaactcatattataaaatgttagacatg |
186 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
1503872 |
aacaaccctaacatatcatttatacataaat----gtagatggttctctgtagatggttctcaatatacgtacaactcatattataaaatgctagacatg |
1503777 |
T |
|
| Q |
187 |
tgataagttatagatatacatattcaaaccgactttatatttttatcgttatatttaatgtgtgtaagtttcatcgccgtattctttcaaaagacattat |
286 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1503776 |
tgataagttatggatatacatattcgaaccgactttatatttttatcgttatatttaatgtgtgtaagtttcatcgccgtattctttcaaaagacattat |
1503677 |
T |
|
| Q |
287 |
aaatataaagcattagacaaggcacctaaactagaaaagttagacacgtagagtagttcacggtttcacttnnnnnnnnccatacacatcacacaacacc |
386 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1503676 |
aaatgtaaagcattagagaaggcacctaaactagaaaagttagacacgtagagtagttcacggtttcacttaaaaaaaaccatacacatcacacaacacc |
1503577 |
T |
|
| Q |
387 |
tcaaaccttactcnnnnnnncccatcttcttcctctttctatattatctctac----ctagctgcatttattttcactaaccccatgactcaacactttt |
482 |
Q |
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|||||||||| || |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1503576 |
tcaaaccttaatctttttttcccaacttcttcctctttctatattatctctacctagctagctgcatttattttcactaaccccatgactcaacactttt |
1503477 |
T |
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| Q |
483 |
ctatttaacccaactctcttttctcattcat |
513 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
1503476 |
ctatttaacccaactcacttttctcattcat |
1503446 |
T |
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