View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_low_8 (Length: 494)
Name: NF3238_low_8
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 32290742 - 32290392
Alignment:
| Q |
8 |
atgaaagagaaaatatacatatgcagttggggttggtgctaaaattaaatactcttccttttcnnnnnnnacgcaaaaattaaatactcttcctaactag |
107 |
Q |
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| T |
32290742 |
atgaaagagaaaatatacatatgcagttggggttggtgctaaaattaaatactcttccttttctttttttacgcaaaaattaaatactcttcctaactag |
32290643 |
T |
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| Q |
108 |
tgatatatatgatactattattttaaggatatgacacaatgatgatgatgatccaccggaacccgttggaaatgggaaaggcaactactttgccactgaa |
207 |
Q |
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| T |
32290642 |
tgatatatatgatactattattttaaggatatgacacaatgatgatgatgatccaccggaacccgttggaaatgggaaaggcaactactttgccactgaa |
32290543 |
T |
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| Q |
208 |
tac-ttgctggattggagatgtgggtcaggccttataaataagttgcagttcaaaactagtagtgatactactcctatttcatgtatgacttttggaggt |
306 |
Q |
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| T |
32290542 |
tgctttgctgg-ttggagatgtgggtcaggccttataaataagttgcagttcaaaactagtaatgatactactcctatttcatgtatgacttttggaggt |
32290444 |
T |
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| Q |
307 |
caa-ttttgtaaattgttgtttagctcgaaattggtcgcaagcaactcaaat |
357 |
Q |
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| T |
32290443 |
caatttttgtaaattgttgtttagctcgaaattggtcgcaagcaactcaaat |
32290392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 32290213 - 32290091
Alignment:
| Q |
357 |
ttttcaaaaatacattcacttgaagttatgaacttgaatggtagttataaattgttctcagaaacaagatagttacaagtcgtccttaggaacgagag-t |
455 |
Q |
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|||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32290213 |
tttttaaaaatacatccacatgaagttatgaacttgaatggtagttataaattgttctcagaaacaagatagttacaagtcgtccttaggaacgagagtt |
32290114 |
T |
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| Q |
456 |
aagatgtggaagcaggaaggaat |
478 |
Q |
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| T |
32290113 |
aagatgtgggagcaggaaggaat |
32290091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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