View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3238_low_9 (Length: 478)

Name: NF3238_low_9
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3238_low_9
NF3238_low_9
[»] chr7 (5 HSPs)
chr7 (6-216)||(2353384-2353594)
chr7 (334-461)||(2353648-2353775)
chr7 (6-45)||(22532787-22532826)
chr7 (6-43)||(18496499-18496536)
chr7 (6-43)||(29544453-29544490)
[»] chr8 (4 HSPs)
chr8 (6-43)||(16052421-16052458)
chr8 (6-40)||(29291708-29291742)
chr8 (6-43)||(13530249-13530286)
chr8 (6-43)||(13619788-13619825)
[»] chr6 (2 HSPs)
chr6 (6-43)||(30355260-30355297)
chr6 (6-43)||(15576306-15576343)
[»] chr5 (1 HSPs)
chr5 (6-43)||(22967986-22968023)
[»] chr4 (2 HSPs)
chr4 (6-43)||(17339957-17339994)
chr4 (6-34)||(18444198-18444226)
[»] chr2 (6 HSPs)
chr2 (6-43)||(18236446-18236483)
chr2 (6-43)||(21505283-21505320)
chr2 (6-43)||(29769623-29769660)
chr2 (6-43)||(22164394-22164431)
chr2 (6-39)||(39730385-39730418)
chr2 (7-39)||(16196021-16196053)
[»] chr3 (1 HSPs)
chr3 (6-43)||(8402694-8402731)
[»] chr1 (2 HSPs)
chr1 (6-43)||(26101991-26102028)
chr1 (7-43)||(23223345-23223381)
[»] scaffold0190 (1 HSPs)
scaffold0190 (6-34)||(11841-11869)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 2353384 - 2353594
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcattaatgtgccggaaagttagtaacgtgactctggatgcgatggatagttgtggagaatacact 105  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||| |||| ||||||||||||||||||||||||| |    
T  2353384 aaaaacatagcctaaaatatcatacgatgctccgtcattaatgtgtcggaaagttagaaacgtaactttggaagcgatggatagttgtggagaatacatt 2353483  T
Q  106 gatctacattctaatctccagaggattgtgactgaaacagatcctgccatccattatcgattaaggcttagatggaagaattacgtaggtattgcagacc 205  Q
    |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2353484 gatctatattctaatctcaaggggattgtgactgaaacagatcctgccatccattatcgattaaggcttagatggaagaattacgtaggtattgcagacc 2353583  T
Q  206 aagcgactcag 216  Q
    |||||||||||    
T  2353584 aagcgactcag 2353594  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 334 - 461
Target Start/End: Original strand, 2353648 - 2353775
Alignment:
Q  334 ttgttattttaaactctcgacactgatattttgaaggctcaagatcatattaatttgatgttgtttacataattttatgctatcttctgtaaatttttat 433  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2353648 ttgttattttaaactctcgacactgatattttgaaggctcaggatcatattaatttgatgttgtttacataattttatgctatcttctgcaaatttttat 2353747  T
Q  434 gcttccttctgtcaatttcgttgttctg 461  Q
    | |||||||||||||||||||| |||||    
T  2353748 gtttccttctgtcaatttcgttattctg 2353775  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 22532787 - 22532826
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcatta 45  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  22532787 aaaaacatagcctaaaatatcatatgatgctccatcatta 22532826  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 18496536 - 18496499
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  18496536 aaaaacatagcctaaaatatcatatggtgctccatcat 18496499  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 29544490 - 29544453
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  29544490 aaaaacatagccaaaaatatcatatgatgctccttcat 29544453  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 16052421 - 16052458
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    |||||||||||| |||||||||||||||||||||||||    
T  16052421 aaaaacatagccaaaaatatcatatgatgctccgtcat 16052458  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 29291742 - 29291708
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgt 40  Q
    ||||||||||||||||||||||||||||| |||||    
T  29291742 aaaaacatagcctaaaatatcatatgatgttccgt 29291708  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 13530249 - 13530286
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  13530249 aaaaacatagcctaaaacatcatatgatgctccatcat 13530286  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 13619788 - 13619825
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  13619788 aaaaacatagcctaaaacatcatatgatgctccatcat 13619825  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 30355297 - 30355260
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    |||||||||||| |||||||||||||||||||||||||    
T  30355297 aaaaacatagccaaaaatatcatatgatgctccgtcat 30355260  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 15576306 - 15576343
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  15576306 aaaaacatagccaaaaatatcatatgatgctccatcat 15576343  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 22967986 - 22968023
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    |||||||||||||||||||||||||||| |||||||||    
T  22967986 aaaaacatagcctaaaatatcatatgatactccgtcat 22968023  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 17339957 - 17339994
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  17339957 aaaaacatagcctaaaatatcatatgatgctccatcat 17339994  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 18444226 - 18444198
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatg 34  Q
    |||||||||||||||||||||||||||||    
T  18444226 aaaaacatagcctaaaatatcatatgatg 18444198  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 18236446 - 18236483
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  18236446 aaaaacatagcataaaatatcatatgatgctccgtcat 18236483  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 21505283 - 21505320
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    |||||||||||| |||||||||||||||||||||||||    
T  21505283 aaaaacatagccaaaaatatcatatgatgctccgtcat 21505320  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 29769660 - 29769623
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29769660 aaaaacatagcctaaaatattatatgatgctccgtcat 29769623  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 22164394 - 22164431
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  22164394 aaaaatatagcctaaaatatcatatgatgctccatcat 22164431  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 39730418 - 39730385
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccg 39  Q
    |||||||||||||||||||| |||||||||||||    
T  39730418 aaaaacatagcctaaaatattatatgatgctccg 39730385  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 16196021 - 16196053
Alignment:
Q  7 aaaacatagcctaaaatatcatatgatgctccg 39  Q
    |||||||||||||||||| ||||||||||||||    
T  16196021 aaaacatagcctaaaatagcatatgatgctccg 16196053  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 8402694 - 8402731
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  8402694 aaaaacatagtctaaaatatcatatgatgctctgtcat 8402731  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 26102028 - 26101991
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  26102028 aaaaacatcgcctaaaatatcatatgatgctccatcat 26101991  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 23223381 - 23223345
Alignment:
Q  7 aaaacatagcctaaaatatcatatgatgctccgtcat 43  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  23223381 aaaacatagccaaaaacatcatatgatgctccgtcat 23223345  T

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Target: scaffold0190 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 11841 - 11869
Alignment:
Q  6 aaaaacatagcctaaaatatcatatgatg 34  Q
    |||||||||||||||||||||||||||||    
T  11841 aaaaacatagcctaaaatatcatatgatg 11869  T

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