View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3240_high_1 (Length: 282)
Name: NF3240_high_1
Description: NF3240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3240_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 43 - 267
Target Start/End: Complemental strand, 9598870 - 9598646
Alignment:
| Q |
43 |
aattatgattggcttcttcctaatttaggtttcggtagtatggatttgaaaggaaaaaatctttgttacaaccaaaccactaaacaacgttgttactgaa |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9598870 |
aattatgattggcttcttcctaatttaggttttggtagtatggatttgaaaggaaaaaatctttgttacaaccaaaccactaaacaacgttgttactgaa |
9598771 |
T |
|
| Q |
143 |
aggcttgttaaaaagaacgttgttaatgacagaaaatatgtcattgatttcataatcacgacataactaggatatgatgtcaatccaagaaattcatcac |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9598770 |
aggcttgttaaaaagaacgttgttaatgacagaaaatacgtcattgatttcataatcacgacataactaggatatgatgtcaatccaagaaattcatcac |
9598671 |
T |
|
| Q |
243 |
ttcaaagactaatcattgaattaat |
267 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9598670 |
ctcaaagactaatcattgaattaat |
9598646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 33956815 - 33956884
Alignment:
| Q |
42 |
taattatgattggcttcttcctaatttaggtttcggtagtatggatttgaaaggaaaaaatctttgttac |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | | |||||||||||||||||||| |||||||||| |
|
|
| T |
33956815 |
taattatgattaatttcttcctaatttaggtttttgcattatggatttgaaaggaaaaagtctttgttac |
33956884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 9598917 - 9598883
Alignment:
| Q |
29 |
agtttaaggtgattaattatgattggcttcttcct |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
9598917 |
agtttaaggtgattaattatgattggcttcttcct |
9598883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 933509 - 933562
Alignment:
| Q |
161 |
gttgttaatgacagaaaatatgtcattgatttcataatcacgacataactagga |
214 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
933509 |
gttgttagtgacagaaaattcatcattgatttcataatcacaacatacctagga |
933562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 933442 - 933474
Alignment:
| Q |
81 |
tatggatttgaaaggaaaaaatctttgttacaa |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
933442 |
tatggatttgaaaggaaaaaatctatgttacaa |
933474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 33956918 - 33956974
Alignment:
| Q |
158 |
aacgttgttaatgacagaaaatatgtcattgatttcataatcacgacataactagga |
214 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||| || || |||||| |
|
|
| T |
33956918 |
aacgttgttagtgacagaaaattcctcattgatttcataatcacaacttacctagga |
33956974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University