View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3240_low_1 (Length: 566)
Name: NF3240_low_1
Description: NF3240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3240_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 8e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 33327228 - 33327061
Alignment:
| Q |
25 |
cctcctcttgtttttaatctcccctaaaatcccttcccactgacaaagtaacctctcaatt-cgtttctttattatcatcctcattcctcactttcaacg |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
33327228 |
cctcctcttgtttttaatctcccctaaaatcccttcccactgacaaagtaacctctcaatttcatttctttattatcatcctcattcctcactttcaacg |
33327129 |
T |
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| Q |
124 |
ctctttctttattttctcacaagttccaataattctcaactactaaactaattctcccactaatgtaa |
191 |
Q |
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| T |
33327128 |
ctctttctttatcttctcacaagttccaacaattctcaactactaaactaattctcccactaatgtaa |
33327061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 400 - 548
Target Start/End: Complemental strand, 33326852 - 33326704
Alignment:
| Q |
400 |
tccccaaccgccgtcacatccctctaggacccatccccgccctccacagcctcaccatgtctctcatctccgccacaatcttcaccggaacactaatctc |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33326852 |
tccccaaccgccgtcacatccctctaggacccatccccgccctccacagcctcaccatgtctctcatctccgccacaatcttcaccggaacactaatctc |
33326753 |
T |
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| Q |
500 |
cgctgtatcagaaatccgtgacacacaatggttctggcatcgttccaaa |
548 |
Q |
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| T |
33326752 |
cgctgtatcagaaattcgtgacacacaatggttctggcatcgttccaaa |
33326704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 249 - 326
Target Start/End: Complemental strand, 33327003 - 33326926
Alignment:
| Q |
249 |
cttatctactacctctcagaacacccatcaatcatctcattccgttggagccacagtcactcatggggttcaacatgg |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33327003 |
cttatctactacctctcagaacacccatcaatcatctcattccgttggagccacagtcactcatggggttcaacatgg |
33326926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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