View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3240_low_4 (Length: 218)
Name: NF3240_low_4
Description: NF3240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3240_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 21842859 - 21843051
Alignment:
| Q |
13 |
cagagagaacaacaggaatagcatgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaataaataaagattaaaactttggataa |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21842859 |
cagagagaacaacaggaatagcttgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaataaataaagattaaaactttggataa |
21842958 |
T |
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| Q |
113 |
ctgaagcttgcccatgaagtgaaatatgatttaaaacac-aaaattcaagaaacaaagagttaccacgaagttggtcacataaggtttggtga |
204 |
Q |
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| T |
21842959 |
ctgaagcttgcccatgaagtgaaatatgatttaaaacacaaaaattcaggaaacaaagagttaccacgaagttggtcacataaggtttggtga |
21843051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 21898722 - 21898914
Alignment:
| Q |
13 |
cagagagaacaacaggaatagcatgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaataaataaagattaaaactttggataa |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21898722 |
cagagagaacaacaggaatagcttgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaataaataaagattaaaactttggataa |
21898821 |
T |
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| Q |
113 |
ctgaagcttgcccatgaagtgaaatatgatttaaaacac-aaaattcaagaaacaaagagttaccacgaagttggtcacataaggtttggtga |
204 |
Q |
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| T |
21898822 |
ctgaagcttgcccatgaagtgaaatatgatttaaaacacaaaaattcaggaaacaaagagttaccacgaagttggtcacataaggtttggtga |
21898914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 18889973 - 18890046
Alignment:
| Q |
13 |
cagagagaacaacaggaatagcatgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaa |
86 |
Q |
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|||||||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||||||| |||| |
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| T |
18889973 |
cagagagaacaacaggaatagcttgagcttgaactaacgttggaccttcaaaacccattctttctgttcaaaaa |
18890046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 18890121 - 18890155
Alignment:
| Q |
170 |
agttaccacgaagttggtcacataaggtttggtga |
204 |
Q |
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| T |
18890121 |
agttaccacgaagttggtcacataaggtttggtga |
18890155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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