View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3241_high_10 (Length: 245)

Name: NF3241_high_10
Description: NF3241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3241_high_10
NF3241_high_10
[»] chr1 (7 HSPs)
chr1 (18-138)||(26885203-26885323)
chr1 (148-233)||(22580480-22580565)
chr1 (138-230)||(34059159-34059251)
chr1 (138-236)||(33054239-33054341)
chr1 (138-236)||(48666043-48666141)
chr1 (149-237)||(18391436-18391525)
chr1 (149-185)||(12372252-12372288)
[»] chr4 (2 HSPs)
chr4 (138-236)||(41501937-41502035)
chr4 (161-233)||(19140259-19140331)
[»] chr5 (1 HSPs)
chr5 (138-236)||(29635499-29635597)
[»] scaffold0010 (1 HSPs)
scaffold0010 (138-234)||(251400-251496)
[»] chr7 (1 HSPs)
chr7 (139-236)||(39052673-39052770)
[»] chr8 (1 HSPs)
chr8 (138-234)||(3695190-3695286)
[»] chr3 (1 HSPs)
chr3 (161-233)||(678803-678875)
[»] scaffold0049 (1 HSPs)
scaffold0049 (193-236)||(45241-45284)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 26885203 - 26885323
Alignment:
Q  18 aaatataggtgtgacataaaacacaactaatttattttccatatttttgttaaattaactcctatcaaatagctatctcatttcaataaaaataacaaag 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  26885203 aaatataggtgtgacataaaacacaactaatttatttttcatatttttgttaaattaactcccatcaaatagctatctcatttcaataaaaaaaacaaag 26885302  T
Q  118 tcactatttcagtcatggaga 138  Q
    |||||||||||||| ||||||    
T  26885303 tcactatttcagtcgtggaga 26885323  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 22580480 - 22580565
Alignment:
Q  148 gcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacct 233  Q
    ||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  22580480 gcacatagtcctcaggggatgcacttgccaaccctcaaattttaattttttcacatatacccctatgttttttgcactttgaacct 22580565  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 34059159 - 34059251
Alignment:
Q  138 agtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaa 230  Q
    ||||||||  |||||||||  | |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  34059159 agtggcaggtgcacatagtcttcaggggatgcacttgccaaccctcaaattttaattttttcacatatacccctatgttttttgcactttgaa 34059251  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 33054341 - 33054239
Alignment:
Q  138 agtggcagaggcacatagtgctgaggggatgcacttgccaacc----ctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacct 233  Q
    |||||| |||||||||||| |||||||||||||||||||||||    ||||||||||||   |||||||||||||| ||||||||||||||||| |||||    
T  33054341 agtggcggaggcacatagtactgaggggatgcacttgccaaccaaccctcaaaattaaaaaatttcacatatacccttatgttttttgcactttaaacct 33054242  T
Q  234 cct 236  Q
    |||    
T  33054241 cct 33054239  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 48666141 - 48666043
Alignment:
Q  138 agtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacctcct 236  Q
    |||||||||| ||||| | | |||||||||||| ||||||||||||||| | |  |||||||||||||| ||||||  |||||||| ||||||||||||    
T  48666141 agtggcagagccacattgcggtgaggggatgcatttgccaaccctcaaattaattttttttcacatatatccctattgtttttgcattttgaacctcct 48666043  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 18391436 - 18391525
Alignment:
Q  149 cacatagtgctgaggggatgcacttgccaaccctcaaaattaaatttttt-cacatatacccctatgttttttgcactttgaacctcctt 237  Q
    ||||||||  |||||||||||||||||||||||||||| |||| |||||| ||||||||  | |||  |||| ||| |||||||||||||    
T  18391436 cacatagttgtgaggggatgcacttgccaaccctcaaatttaatttttttccacatatattcatattgttttagcaatttgaacctcctt 18391525  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 12372288 - 12372252
Alignment:
Q  149 cacatagtgctgaggggatgcacttgccaaccctcaa 185  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  12372288 cacattgtggtgaggggatgcacttgccaaccctcaa 12372252  T

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Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 41502035 - 41501937
Alignment:
Q  138 agtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacctcct 236  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  41502035 agtggcggaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatatccctatgtttttagcactttgaacctcct 41501937  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 19140259 - 19140331
Alignment:
Q  161 aggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacct 233  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||    
T  19140259 aggggatgcacttgccaaccctcaaattttaattttttcacatatacccctatgttttttgcaatttgaacct 19140331  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 29635499 - 29635597
Alignment:
Q  138 agtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacctcct 236  Q
    |||||| |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29635499 agtggcggaggtacatagtgatgaggggatgcacttgccaaccttcaaaattaaattttttcatatatacccctatgttttttgcactttgaacctcct 29635597  T

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Target: scaffold0010 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 251496 - 251400
Alignment:
Q  138 agtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacctc 234  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||  |||||||||    
T  251496 agtggcagaggcacatagtgccgaggggatgcacttgccaaccctcaaaatttctttttttcacatatatccctatgttttttgcatgttgaacctc 251400  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 39052770 - 39052673
Alignment:
Q  139 gtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacctcct 236  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  || |  |||||||||| ||||||| ||||||||||||||||||||||||    
T  39052770 gtggcggaggcacatagtgctgaggggatgcacttgccaaccctcaatttttatctttttcacatgtacccctgtgttttttgcactttgaacctcct 39052673  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 3695286 - 3695190
Alignment:
Q  138 agtggcagaggcacatagtgctgaggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacctc 234  Q
    |||||||||||||||||||||||||  ||||||||||||||| |||||  || |  ||||||||| |||||||||||||||||||||||||||||||    
T  3695286 agtggcagaggcacatagtgctgagaagatgcacttgccaactctcaatttttatctttttcacaaatacccctatgttttttgcactttgaacctc 3695190  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 678875 - 678803
Alignment:
Q  161 aggggatgcacttgccaaccctcaaaattaaattttttcacatatacccctatgttttttgcactttgaacct 233  Q
    ||||||| || ||||||||||||||| || |||||||||||||||| || |||||||||||||||||||||||    
T  678875 aggggatacatttgccaaccctcaaattttaattttttcacatatatccttatgttttttgcactttgaacct 678803  T

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Target: scaffold0049 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 45241 - 45284
Alignment:
Q  193 ttttttcacatatacccctatgttttttgcactttgaacctcct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45241 ttttttcacatatacccctatgttttttgcactttgaacctcct 45284  T

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