View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3241_high_12 (Length: 240)
Name: NF3241_high_12
Description: NF3241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3241_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14003971 - 14004191
Alignment:
| Q |
1 |
agggaaaacataaaacaccaagaactaaatagatgttagacctcaaaccatcaatgaagagaccaaaccacaaaaatgctatgaggacactttgtgtgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14003971 |
agggaaaacataaaacaccaagaactaaatagatgttagacctcaaaccatcaatgaagagagcaaaccacaaaaatgctatgaggacactttgtgtgta |
14004070 |
T |
|
| Q |
101 |
tctgcaagtgggggcaatcacgtgctaagtcgggttagaggcactccatcaaaattatggcaatgaggagaagttttgcgccactgtgagatgtgatgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14004071 |
tctgcaagtgggggcaatcacgtgctaagtcgggttagaggcactccatcaaaattatggcaatgaggagaagttttgcgccactgtgagatgtgatgac |
14004170 |
T |
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| Q |
201 |
ttgatagaactccagacatac |
221 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
14004171 |
ttgatagaactcgagacatac |
14004191 |
T |
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