View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3241_high_8 (Length: 252)

Name: NF3241_high_8
Description: NF3241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3241_high_8
NF3241_high_8
[»] chr1 (5 HSPs)
chr1 (53-252)||(33053638-33053837)
chr1 (57-224)||(22580822-22580991)
chr1 (79-227)||(34059510-34059660)
chr1 (16-54)||(33053566-33053604)
chr1 (22-55)||(22581026-22581059)
[»] chr4 (5 HSPs)
chr4 (53-252)||(41501539-41501738)
chr4 (57-148)||(19140638-19140729)
chr4 (68-130)||(34294869-34294931)
chr4 (16-54)||(41501467-41501505)
chr4 (22-55)||(19140764-19140797)
[»] scaffold0049 (2 HSPs)
scaffold0049 (53-252)||(45493-45692)
scaffold0049 (22-54)||(45724-45756)
[»] chr5 (2 HSPs)
chr5 (53-245)||(29635832-29636024)
chr5 (16-54)||(29636056-29636094)
[»] chr7 (1 HSPs)
chr7 (57-244)||(39052249-39052437)
[»] chr3 (2 HSPs)
chr3 (57-230)||(678388-678565)
chr3 (22-55)||(678320-678353)
[»] chr8 (1 HSPs)
chr8 (83-227)||(3694802-3694946)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 53 - 252
Target Start/End: Original strand, 33053638 - 33053837
Alignment:
Q  53 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 152  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  33053638 aaatccaaatttcaaaaccttaaaccaaagatttttaattgattaccttggtggttggttcaatgtctttgaaggcttttgaatacccctttgtggttgc 33053737  T
Q  153 acgaccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaactacaacgtgattgtagatggtag 252  Q
    |||||  |||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33053738 acgacgtcggaggacggcgaaatacggtggagacggtggtggtttattgcaactgatttttgagatggagagagaactaaaacgtgattgtagatggtag 33053837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 22580991 - 22580822
Alignment:
Q  57 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacga 156  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  22580991 ccaaatttaaaaaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtggttgcacga 22580892  T
Q  157 ccgcggaggacgaggaaataaggtggagatggtggtggtt--tattgcaactgatttttgagatggagag 224  Q
    | || |||||||| ||||||||| |||||  |||| ||||    ||||||| |||||||||||| |||||    
T  22580891 cggcagaggacgacgaaataaggcggagaaagtggcggttcgcgttgcaacagatttttgagatagagag 22580822  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 79 - 227
Target Start/End: Complemental strand, 34059660 - 34059510
Alignment:
Q  79 aaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacgaccgcggaggacgaggaaataag 178  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||| || |||||||| ||||||||    
T  34059660 aaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtcactttgtggttgcacgacggcagaggacgacgaaataag 34059561  T
Q  179 gtggagatggtggtggtt--tattgcaactgatttttgagatggagagaga 227  Q
    | |||||  |||||||||    ||||||| |||||||||||| ||||||||    
T  34059560 gcggagaaagtggtggttcgcgttgcaacagatttttgagatagagagaga 34059510  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 33053566 - 33053604
Alignment:
Q  16 agacacatcattaggaccctcaattgcatattcaatcaa 54  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  33053566 agacatatcattaggaccctcaattgcatattcaatcaa 33053604  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 22581059 - 22581026
Alignment:
Q  22 atcattaggaccctcaattgcatattcaatcaaa 55  Q
    ||||||||||||||||||||||||||||||||||    
T  22581059 atcattaggaccctcaattgcatattcaatcaaa 22581026  T

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Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 252
Target Start/End: Original strand, 41501539 - 41501738
Alignment:
Q  53 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||    
T  41501539 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaagcttttgaatgtccctttgcggttgc 41501638  T
Q  153 acgaccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaactacaacgtgattgtagatggtag 252  Q
    ||||| ||||||||||   |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41501639 acgacggcggaggacggcaaaataaggtggagacggtggtgatttattgcaactgatttttgagatggagagagaactaaaacgtgattgtagatggtag 41501738  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 19140729 - 19140638
Alignment:
Q  57 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtgg 148  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  19140729 ccaaatttaaaaaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtgg 19140638  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 34294931 - 34294869
Alignment:
Q  68 aaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggctt 130  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  34294931 aaccctaaaccaaagattttgaattgattaccttagtggtagattcaatgtctttgaaggctt 34294869  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 41501467 - 41501505
Alignment:
Q  16 agacacatcattaggaccctcaattgcatattcaatcaa 54  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  41501467 agacatatcattaggaccctcaattgcatattcaatcaa 41501505  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 19140797 - 19140764
Alignment:
Q  22 atcattaggaccctcaattgcatattcaatcaaa 55  Q
    ||||||||||||||||||| ||||||||||||||    
T  19140797 atcattaggaccctcaatttcatattcaatcaaa 19140764  T

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Target: scaffold0049 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 53 - 252
Target Start/End: Complemental strand, 45692 - 45493
Alignment:
Q  53 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 152  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||  ||||     
T  45692 aaatccaaatttcaaaaccctaaaccaaatatttttaattgattaccttggtggtagattcaatgtctttgaaagcttttgaatgtccctttgcagttgt 45593  T
Q  153 acgaccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaactacaacgtgattgtagatggtag 252  Q
    ||||| ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45592 acgacggcggaggacggtgaaataaggtggagacggtggtgatttattgcaactgatttttgagatggagagagaactaaaacgtgattgtagatggtag 45493  T

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Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 45756 - 45724
Alignment:
Q  22 atcattaggaccctcaattgcatattcaatcaa 54  Q
    |||||||||||||||||||| ||||||||||||    
T  45756 atcattaggaccctcaattgaatattcaatcaa 45724  T

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Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 53 - 245
Target Start/End: Complemental strand, 29636024 - 29635832
Alignment:
Q  53 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgc 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||  ||||||| ||||||    
T  29636024 aaatccaaatttcaaaaccctaaaccaaagatttttaattgattaccttgttggtagattcaatgtctttgaaagcttttgaatgtccctttgcggttgc 29635925  T
Q  153 acgaccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaactacaacgtgattgtag 245  Q
    ||||| ||||||||||  ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  29635924 acgacggcggaggacggcgaaataaggtggagacggtggtgatttatcgcaactgatttttgagatggagagagaactaaaacgtgattgtag 29635832  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 29636094 - 29636056
Alignment:
Q  16 agacacatcattaggaccctcaattgcatattcaatcaa 54  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  29636094 agacatatcattaggaccctcaattgcatattcaatcaa 29636056  T

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Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 57 - 244
Target Start/End: Original strand, 39052249 - 39052437
Alignment:
Q  57 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacga 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||  ||||||||||||||||||    
T  39052249 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcagtgtctttaaaggtttctgaatgtccctttgtggttgcacga 39052348  T
Q  157 ccgcggaggacgaggaaataaggtggagatggtggtggtttattgcaactgatttttgagatggagagagaact-acaacgtgattgta 244  Q
    | |||||| |||  |||||| | ||||||  |||||| |||  |||||| ||||||| ||||||||||||| || | ||||||||||||    
T  39052349 cggcggagaacggcgaaataggatggagaccgtggtgatttgctgcaacagattttttagatggagagagagctcaaaacgtgattgta 39052437  T

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Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 57 - 230
Target Start/End: Original strand, 678388 - 678565
Alignment:
Q  57 ccaaatttcaaaaccctaaaccaaagatttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacga 156  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  678388 ccaaatttaaaaaccctaaaccaaagatttataattgattaccttggtggtagattcaatgtctttgaaggcttttgaatgtccctttgtggttgcacga 678487  T
Q  157 ccgcggaggacgaggaaataaggtggagatggtggtggtt----tattgcaactgatttttgagatggagagagaact 230  Q
    |  | |||||||| ||||||||| |||||  |||||||||      |||||||  ||||||||||| |||||||||||    
T  678488 cgacagaggacgacgaaataaggcggagaaagtggtggttcgcgcgttgcaacaaatttttgagatagagagagaact 678565  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 678320 - 678353
Alignment:
Q  22 atcattaggaccctcaattgcatattcaatcaaa 55  Q
    ||||||||||||||||||| ||||||||||||||    
T  678320 atcattaggaccctcaattacatattcaatcaaa 678353  T

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Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 83 - 227
Target Start/End: Original strand, 3694802 - 3694946
Alignment:
Q  83 atttttaattgattaccttggtggtagattcaatgtctttgaaggcttttgaatacccctttgtggttgcacgaccgcggaggacgaggaaataaggtgg 182  Q
    |||||||||||||||||||||||||||||||| ||||||| |||| || ||||| |||||||||||||||||||| |||||| |||  |||||| |||||    
T  3694802 atttttaattgattaccttggtggtagattcagtgtctttaaaggtttctgaatgcccctttgtggttgcacgacggcggagaacggcgaaatagggtgg 3694901  T
Q  183 agatggtggtggtttattgcaactgatttttgagatggagagaga 227  Q
    |||  |||||| |||  |||||| ||||||| |||||||||||||    
T  3694902 agaccgtggtgatttgctgcaacagattttttagatggagagaga 3694946  T

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