View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3241_low_3 (Length: 460)
Name: NF3241_low_3
Description: NF3241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3241_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 45519779 - 45520111
Alignment:
| Q |
18 |
gaatttgtatccaaaaatgtagcaaagagttgatgaatggtggtggctgaaaactatgaaaacaatgagcttaataaaaattgaggaactgaatagttta |
117 |
Q |
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| T |
45519779 |
gaatttgtatccaaaaatgtagcaaagagttgatgaatggtggtggctgaaaactatgaaaacaatgagcttaataaaaattgaggaactgaatagttta |
45519878 |
T |
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| Q |
118 |
atggtattaatgaattaacgttattaa-ttagtatgctacaagtacaaatcagttggtataatttaaatgagctactcttgaatcgtgaagacgttaaca |
216 |
Q |
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| T |
45519879 |
atggtattaatgaattaacgttattaaattagtatg--------------------gtataatttaaatgaactcctcttgaatcgtgaagacgttaaca |
45519958 |
T |
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| Q |
217 |
agtagtattgatgacatttggtgtcgttatcatcgatcttctatatagtattagatttaaactgcaccccctccatcattagttttcaaatgaacattac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45519959 |
agtagtattgatgacatttggtgtcgttatcatcgatcttctatatagtattagatttaaactgcaccccctccatcattcgttttcaaatgaacattac |
45520058 |
T |
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| Q |
317 |
ttggcttccgtcctttgctagctatatatgatcttcttcttcatttttcttag |
369 |
Q |
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| T |
45520059 |
ttggcttccgtcctttgctagctatatatgatcttcttcttcatttttcttag |
45520111 |
T |
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