View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3241_low_4 (Length: 440)

Name: NF3241_low_4
Description: NF3241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3241_low_4
NF3241_low_4
[»] chr7 (7 HSPs)
chr7 (12-202)||(46170119-46170313)
chr7 (278-393)||(8039251-8039366)
chr7 (279-423)||(42574855-42574999)
chr7 (278-334)||(19336942-19336998)
chr7 (238-283)||(46170031-46170079)
chr7 (278-334)||(44712434-44712490)
chr7 (287-348)||(24578704-24578765)
[»] chr2 (4 HSPs)
chr2 (281-423)||(14294887-14295029)
chr2 (278-392)||(27546939-27547050)
chr2 (278-337)||(31484367-31484426)
chr2 (278-334)||(10927232-10927288)
[»] chr4 (3 HSPs)
chr4 (278-423)||(4216152-4216297)
chr4 (283-423)||(3797033-3797173)
chr4 (278-355)||(21880742-21880819)
[»] chr1 (2 HSPs)
chr1 (283-423)||(21545217-21545357)
chr1 (282-348)||(7330150-7330216)
[»] chr5 (5 HSPs)
chr5 (278-388)||(11848076-11848186)
chr5 (278-334)||(31056930-31056986)
chr5 (278-329)||(31042951-31043002)
chr5 (287-353)||(21941424-21941490)
chr5 (286-331)||(20534770-20534815)
[»] scaffold0026 (1 HSPs)
scaffold0026 (338-423)||(69947-70032)
[»] chr3 (2 HSPs)
chr3 (281-394)||(13423449-13423562)
chr3 (278-346)||(45295026-45295094)
[»] chr8 (1 HSPs)
chr8 (278-334)||(26674263-26674319)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 46170313 - 46170119
Alignment:
Q  12 tgagatgaagccaatgatcaacaaaggtcattcacaaattatgacatcaaggtactactatacaacttccattttatttatttatgtgctc----tcnnn 107  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||    |        
T  46170313 tgagatgaagccaatgatcgacaaagatcattcacaaattatgacatcaaggtactactatacaacttccattttttttgtttatgtcctcttttttttt 46170214  T
Q  108 nnnnncatcttctaccaatgaannnnnnnctatacaaagagaggaaattgaaaagacacatgatgaagatggtgatcaataataacagtgttaag 202  Q
         |||||||||||||||||       ||||| |||||| |||||||||||||||||| |||| | |||||||||||||||||||||||||||    
T  46170213 tttttcatcttctaccaatgaatttttttctatagaaagagtggaaattgaaaagacacaggatgcatatggtgatcaataataacagtgttaag 46170119  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 393
Target Start/End: Original strand, 8039251 - 8039366
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatg 377  Q
    ||||||| |||||||| ||||||| |||||| |||| ||||||||||||||| |||||  | ||||||||| |||| | || |||| || || |||||||    
T  8039251 atgacaatcattttataatgatatctttgaaagatgattgtccaattcctcccacttccgttctatggagacaacatcatcaacaagacacaaaaaaatg 8039350  T
Q  378 ggatgaaagatatgtc 393  Q
    ||||||||||||||||    
T  8039351 ggatgaaagatatgtc 8039366  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 423
Target Start/End: Original strand, 42574855 - 42574999
Alignment:
Q  279 tgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatgg 378  Q
    ||||||||||||||||||| ||||| | || ||||  |||||||||||||| |||||  |  |||| ||| |||||||  ||||| ||| | |||| |||    
T  42574855 tgacaaccattttatgatggtatatctaaaggatgactgtccaattcctcccacttccgttatatgcagacaacaccgcggacaaaacgtataaaagtgg 42574954  T
Q  379 gatgaaagatatgtcgatagtatgattgtctttaatgtactaagt 423  Q
    |||||||||||||| | ||  ||||||  |||||||| |||||||    
T  42574955 gatgaaagatatgttggtatgatgattagctttaatgaactaagt 42574999  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 19336998 - 19336942
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaactt 334  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||||| |||| ||||    
T  19336998 atgacaaccattttatgataatatttttgaatgatgattgtccaatttctcccactt 19336942  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 46170079 - 46170031
Alignment:
Q  238 acaaattattgt---cttcaacttcaataaacatacaaatatgatgaca 283  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||    
T  46170079 acaaattattgtcttcttcaacttcaataaacatacaaatatgatgaca 46170031  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 44712434 - 44712490
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaactt 334  Q
    ||||||||||||| ||||| ||| ||||||| |||| ||||||||||||||| ||||    
T  44712434 atgacaaccatttcatgataatacatttgaaggatgattgtccaattcctcccactt 44712490  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 24578765 - 24578704
Alignment:
Q  287 attttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggaga 348  Q
    ||||||||||  ||||| ||||||||| ||||||||||||||| | ||  ||||||||||||    
T  24578765 attttatgattgtatatatgaatgatgattgtccaattcctcccaatttcatgctatggaga 24578704  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 423
Target Start/End: Original strand, 14294887 - 14295029
Alignment:
Q  281 acaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatggga 380  Q
    |||||||||||||||||||||||||||| |||| || |||||||||| | |||||| ||||||||||| ||||  ||||| || | ||| ||||||||||    
T  14294887 acaaccattttatgatgatatatttgaaggatggttatccaattccttccacttctgtgctatggagacaacattgtcgagaatatgcaaaaaaatggga 14294986  T
Q  381 tgaaagatatgtcgatagtatgattgtctttaatgtactaagt 423  Q
    |||||||||||||| ||| ||||||| |  ||||| |||||||    
T  14294987 tgaaagatatgtcggtagaatgattgccaataatggactaagt 14295029  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 392
Target Start/End: Original strand, 27546939 - 27547050
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatg 377  Q
    |||||||||||||||||||| | ||||||||  ||| ||||||||||||||| |||    |||||||||||||||||| | ||||| || | ||||||||    
T  27546939 atgacaaccattttatgatggtgtatttgaagaatggttgtccaattcctcccact--cgtgctatggagataacacc-ttgacaagacactgaaaaatg 27547035  T
Q  378 ggatgaaagatatgt 392  Q
    |||||||||||||||    
T  27547036 ggatgaaagatatgt 27547050  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 31484367 - 31484426
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttcta 337  Q
    ||||||||||||||||||| ||||||||||| | || ||||||||||||||| |||||||    
T  31484367 atgacaaccattttatgattatatatttgaaggttggttgtccaattcctcccacttcta 31484426  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 10927232 - 10927288
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaactt 334  Q
    |||| |||||||||||||| ||||||||||| |||| ||||| ||||||||| ||||    
T  10927232 atgaaaaccattttatgataatatatttgaaggatggttgtcaaattcctcccactt 10927288  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 278 - 423
Target Start/End: Original strand, 4216152 - 4216297
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatg 377  Q
    |||| ||||||||||||||| |||||||||  |||| ||||||||||||||| |||||  ||||||||| | |||| |||| | || | ||| |   |||    
T  4216152 atgataaccattttatgatggtatatttgacggatgattgtccaattcctcccacttccgtgctatggaaacaacatcgtcaagaagatgcaaagtcatg 4216251  T
Q  378 ggatgaaagatatgtcgatagtatgattgtctttaatgtactaagt 423  Q
    ||||||||||||||||||||| ||||||| || ||||| |||||||    
T  4216252 ggatgaaagatatgtcgatagaatgattgcctataatgaactaagt 4216297  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 423
Target Start/End: Original strand, 3797033 - 3797173
Alignment:
Q  283 aaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatgggatg 382  Q
    ||||||||||||||| ||||| |||  |||| ||||||||||||||| |||||  ||||||||| | |||| |||| | || | ||| |   ||||||||    
T  3797033 aaccattttatgatggtatatatgacggatgattgtccaattcctcccacttccctgctatggaaacaacatcgtcaagaagatgcaaagtcatgggatg 3797132  T
Q  383 aaagatatgtcgatagtatgattgtctttaatgtactaagt 423  Q
    |||||||||||||||| |||||||||| ||||| |||||||    
T  3797133 aaagatatgtcgatagaatgattgtctataatgaactaagt 3797173  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 355
Target Start/End: Complemental strand, 21880819 - 21880742
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacacc 355  Q
    ||||||||||||||||||| |||||||| || |||| |||||||||| || | ||||| |||||| || || ||||||    
T  21880819 atgacaaccattttatgataatatatttaaaagatgattgtccaattgctgccacttccatgctacggggacaacacc 21880742  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 283 - 423
Target Start/End: Original strand, 21545217 - 21545357
Alignment:
Q  283 aaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatgggatg 382  Q
    |||||||||||||||||||||||||  |||| ||||||| ||||||| |||||  ||||||||||| |||||||| |  || | ||| |   ||| ||||    
T  21545217 aaccattttatgatgatatatttgatggatggttgtccatttcctcccacttccgtgctatggagacaacaccgtagcaaaaatgcaaagtcatgagatg 21545316  T
Q  383 aaagatatgtcgatagtatgattgtctttaatgtactaagt 423  Q
    |||||||| | | ||| |||||||||||||||| |||||||    
T  21545317 aaagatatattggtaggatgattgtctttaatgaactaagt 21545357  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 7330150 - 7330216
Alignment:
Q  282 caaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggaga 348  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||||||||  |||||||||||    
T  7330150 caaccattttatgatgatatatttgaagaatggttgtccaattcctccaacttccgtgctatggaga 7330216  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 388
Target Start/End: Complemental strand, 11848186 - 11848076
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatg 377  Q
    |||||||||||||||| ||| | |||||||| |||| ||||||||||||||| | ||| |||||||||||| |||   ||||| || | ||| |||||||    
T  11848186 atgacaaccattttattatggtttatttgaaggatggttgtccaattcctcctatttccatgctatggagacaactttgtcgagaagatgcaaaaaaatg 11848087  T
Q  378 ggatgaaagat 388  Q
    |||||||||||    
T  11848086 ggatgaaagat 11848076  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 31056986 - 31056930
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaactt 334  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||    
T  31056986 atgacaaccattttatgataatatatttgaatgatggttgtccaattcctcccactt 31056930  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 31043002 - 31042951
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctcc 329  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||||||    
T  31043002 atgacaaccattttatgataatatatttgaatgatggttttccaattcctcc 31042951  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 21941424 - 21941490
Alignment:
Q  287 attttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataaca 353  Q
    ||||||||||| ||||||||||  ||| ||||||||||||||  |||||  ||||||||||| ||||    
T  21941424 attttatgatggtatatttgaagaatggttgtccaattcctctgacttccgtgctatggagacaaca 21941490  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 20534770 - 20534815
Alignment:
Q  286 cattttatgatgatatatttgaatgatgtttgtccaattcctccaa 331  Q
    |||||||||||| |||||||||  |||| |||||||||||||||||    
T  20534770 cattttatgatggtatatttgagggatggttgtccaattcctccaa 20534815  T

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Target: scaffold0026 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 70032 - 69947
Alignment:
Q  338 tgctatggagataacaccgtcgacaacacgcagaaaaatgggatgaaagatatgtcgatagtatgattgtctttaatgtactaagt 423  Q
    |||||||||||  ||||||| ||||| |||||||||||||||||||||||||||||  ||| ||| ||| |||||||| |||||||    
T  70032 tgctatggagactacaccgttgacaagacgcagaaaaatgggatgaaagatatgtcagtaggatggttgcctttaatgaactaagt 69947  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 394
Target Start/End: Complemental strand, 13423562 - 13423449
Alignment:
Q  281 acaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatggga 380  Q
    ||||||||||||||||| |||||||||| |||  |||||||||| || | | || | | ||||||| | |||||||| ||||| |  || ||||||||||    
T  13423562 acaaccattttatgatggtatatttgaaggatagttgtccaatttcttccaattatgttctatggaaacaacaccgttgacaagaaacataaaaatggga 13423463  T
Q  381 tgaaagatatgtcg 394  Q
    | ||||||||||||    
T  13423462 taaaagatatgtcg 13423449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 45295094 - 45295026
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatgga 346  Q
    ||||||||||||| |||| ||||||||||||||||  ||||| ||||||||| |||||  |||||||||    
T  45295094 atgacaaccatttgatgaagatatatttgaatgattgttgtcaaattcctcccacttccctgctatgga 45295026  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 26674319 - 26674263
Alignment:
Q  278 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaactt 334  Q
    ||||||||||||||||||| |||||||| || |||| ||||||||||||||| ||||    
T  26674319 atgacaaccattttatgataatatatttaaaggatggttgtccaattcctcccactt 26674263  T

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