View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3241_low_7 (Length: 257)
Name: NF3241_low_7
Description: NF3241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3241_low_7 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0386 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 6073739 - 6073989
Alignment:
| Q |
7 |
tgtaggaggttgataatcattagaatgatggtagaaacttatatatagtggtttgcaaagtatatgtcaatttcagagctcaagtattgtggtacaattt |
106 |
Q |
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| T |
6073739 |
tgtaggaggttgataatcattagcatgatggtagaaacttatatatagtggtttgcaaagtatatgtcaatttcagagctcaagtattgtggtacaattt |
6073838 |
T |
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| Q |
107 |
ttgcatgcatgtatagaataatcgagattatggtcccaaaatgatgattgtaaaatgaaataggaattttatgctgtataatatgtcttttgagagccac |
206 |
Q |
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| T |
6073839 |
ttgcatgcatgtatagaataatcgagattatggtcccagaatgatgattgtaaaatgaaataggaattttatgctctataatatgtcttttgagagccac |
6073938 |
T |
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| Q |
207 |
atgatgtcttcagatacatatgtttgattaatccttgaatatatctgtgct |
257 |
Q |
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| T |
6073939 |
atgatgtcttcagatacatatgtttgattaatccttgaatatatgtgtgct |
6073989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 6069112 - 6069358
Alignment:
| Q |
7 |
tgtaggaggttgataatcattagaatgatggtagaaacttatatatagtggtttgcaaagtatatgtcaatttcagagctcaagtattgtggtacaattt |
106 |
Q |
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| T |
6069112 |
tgtaggaggttgatgatgattagcatgattgtagaaacttatatatagtagttcgcaaagtatatgtcaatttcagtgctcaagtattgtggtacaattt |
6069211 |
T |
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| Q |
107 |
ttgcatgcatgtatagaataatcgagattatggtcccaaaatgatgattgtaaaatgaaataggaattttatgctgtataatatgtcttttgagagccac |
206 |
Q |
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| T |
6069212 |
ttgcatgcatgcatagaataaacaagattatggtccc-aaatgatgattgtaaaatgaaataggaatgttatgctcaataatatgccttttgagagccac |
6069310 |
T |
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| Q |
207 |
atgatgtcttcagatacatatgtttgattaatccttgaatatatctgtgc |
256 |
Q |
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| T |
6069311 |
cccatatcttcagatac--atgtttgattaatacttgaatatatgtgtgc |
6069358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 5697628 - 5697553
Alignment:
| Q |
7 |
tgtaggaggttgataatcattagaatgatggtagaaacttatatata--gtggtttgcaaagtatatgtcaatttc |
80 |
Q |
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| T |
5697628 |
tgtaggaggctgatgatgattagcatgattgtagaaacttatatatatagtggtatgcaaagtatatgtcaatttc |
5697553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 337 - 509
Alignment:
| Q |
7 |
tgtaggaggttgataatcattagaatgatggtagaaacttatatatagtggtttgcaaagtatatgtcaatttcagagctcaagtattgtggtacaattt |
106 |
Q |
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| T |
337 |
tgtaggaggttgatgatgattagcatgattgtagaaacttatatatagtggtttgcaaagtttatgtcaatttcagtgctcaagtgttgtggtacaattt |
436 |
T |
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| Q |
107 |
ttgcatgcatgtatagaataatcgagattatggtcccaaaatgatgattgtaaaatgaaataggaattttatg |
179 |
Q |
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| T |
437 |
ttgcatgcatgtatagaataatcgagactatggtccgaaaatgatgattcaaaaatgaaataggaatgttatg |
509 |
T |
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