View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3242_low_2 (Length: 295)
Name: NF3242_low_2
Description: NF3242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3242_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 39072735 - 39072456
Alignment:
| Q |
1 |
attaatgtgaaggagtagaaattaaggagattgtggttaaaaatatattaccaagcttgaaagnnnnnnnnattgttgtattgtatatgaaacgttgaag |
100 |
Q |
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| T |
39072735 |
attaatgtgaaggagtagaaattaaggagattgaggttaaaaatatattacctagcttgaaagttttttttattgttgtattgtatatgaaacgttgaag |
39072636 |
T |
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| Q |
101 |
aaggtttttgatggttgaaaaggagggtagagggtatagagggggcccaaaaggaaaggagagaattgagaaagaaaagggaaagtaatttatatatgta |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39072635 |
aaggtttttgatggttgaaaaagagggtagagggtatagagggggcccaaaaggaaaggagagaattgagaaagaaaagggaaagtaatttatatatgta |
39072536 |
T |
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| Q |
201 |
ggaaggggtttttactgaaaggggagtcactgcaaaaagcatgtagacaaatgaatgaaaagaaaaggtagtgcatggtg |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39072535 |
ggaaggggtttttactgaaaggggagtcactgcaaaaagcatgtagacaaatgaatgaaaagaaaaggtagtgcatggtg |
39072456 |
T |
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