View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3243_low_1 (Length: 406)
Name: NF3243_low_1
Description: NF3243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3243_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 94 - 396
Target Start/End: Original strand, 45424655 - 45424977
Alignment:
| Q |
94 |
gtacaagaattactcacaaacttcctcatgtaccaggtatcatcatcatattctacatat--------------------atattcatgttcatttcttt |
173 |
Q |
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| T |
45424655 |
gtacaagaattactcacaaacttcctcatgtaccaggtatcatcctcatattgtacatatatatatatatatatatatatatattcatgttcatttcttt |
45424754 |
T |
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| Q |
174 |
gtataattaattgtttaatgaaactggttttgtgcagcggttccaggtttaccatttattggaaatcttcttcaacttaaagagaagaaacctcacaaaa |
273 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45424755 |
gtataataaattgtttaatgaaactggttttgtgcagcggttccaggtttaccattgattggaaatcttcttcaacttaaagagaagaaacctcacaaaa |
45424854 |
T |
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| Q |
274 |
cattcacaaagatggctcacaaatatggacctattttttccatcaaagctggtgcttctaccatcattgttctcaacactgctcaacttgccaaacaggt |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45424855 |
cattcacaaagatggctcacaaatatggacctattttttccatcaaagctggtgcttctaccatcattgttctcaacactgctcaacttgccaaacaggt |
45424954 |
T |
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| Q |
374 |
tctttacattctaattcattcat |
396 |
Q |
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||||||||||||||||||||||| |
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| T |
45424955 |
tctttacattctaattcattcat |
45424977 |
T |
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