View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3243_low_4 (Length: 349)

Name: NF3243_low_4
Description: NF3243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3243_low_4
NF3243_low_4
[»] chr6 (6 HSPs)
chr6 (7-330)||(8446319-8446642)
chr6 (7-330)||(8455123-8455446)
chr6 (29-95)||(8441476-8441541)
chr6 (29-95)||(8450280-8450345)
chr6 (245-297)||(8442132-8442184)
chr6 (245-297)||(8450936-8450988)
[»] chr5 (1 HSPs)
chr5 (244-297)||(14126741-14126794)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 8446319 - 8446642
Alignment:
Q  7 ggagcagagacgtagggtttttagttatttgagattacttttgtccaagcctgataaaggtgtacaattgaaaagatttatttatttttaataaattcat 106  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8446319 ggagaagaaacgtagggtttttagttatttgagattacttttgtccaagcctggtaaaggtgtacaattgaaaagatttatttatttttaataaattcat 8446418  T
Q  107 agggaaccaaagtatgtgttaattttgttaattttttgataaaaatgtgtaaaaatattagtcaccttctacaaattactattattatcaagagaaagac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446419 agggaaccaaagtatgtgttaattttgttaattttttgataaaaatgtgtaaaaatattagtcaccttctacaaattactattattatcaagagaaagac 8446518  T
Q  207 tagctcatgtggtaagatcaattacacaatagacattatttttatttttaagaaatcaaattaacccatcaaaattaacatgtgggagaattgaaactat 306  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||| | ||| |||||||||||||||    
T  8446519 taactcatgtggtaagatcaattacacaatagacattatttttatttttaagaaatcaaactaaccagccaaaattaaaacgtgagagaattgaaactat 8446618  T
Q  307 gacattaaaacaagcacactctaa 330  Q
    ||||||||||||||||||||||||    
T  8446619 gacattaaaacaagcacactctaa 8446642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 8455123 - 8455446
Alignment:
Q  7 ggagcagagacgtagggtttttagttatttgagattacttttgtccaagcctgataaaggtgtacaattgaaaagatttatttatttttaataaattcat 106  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8455123 ggagaagaaacgtagggtttttagttatttgagattacttttgtccaagcctggtaaaggtgtacaattgaaaagatttatttatttttaataaattcat 8455222  T
Q  107 agggaaccaaagtatgtgttaattttgttaattttttgataaaaatgtgtaaaaatattagtcaccttctacaaattactattattatcaagagaaagac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8455223 agggaaccaaagtatgtgttaattttgttaattttttgataaaaatgtgtaaaaatattagtcaccttctacaaattactattattatcaagagaaagac 8455322  T
Q  207 tagctcatgtggtaagatcaattacacaatagacattatttttatttttaagaaatcaaattaacccatcaaaattaacatgtgggagaattgaaactat 306  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||| | ||| |||||||||||||||    
T  8455323 taactcatgtggtaagatcaattacacaatagacattatttttatttttaagaaatcaaactaaccagccaaaattaaaacgtgagagaattgaaactat 8455422  T
Q  307 gacattaaaacaagcacactctaa 330  Q
    ||||||||||||||||||||||||    
T  8455423 gacattaaaacaagcacactctaa 8455446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 8441476 - 8441541
Alignment:
Q  29 agttatttgagattacttttgtccaagcctgataaaggtgtacaattgaaaagatttatttattttt 95  Q
    ||||||||| |||||||||||||||| | || | |||||||||||||| |||||||| |||||||||    
T  8441476 agttatttgggattacttttgtccaaacttggtcaaggtgtacaattggaaagattt-tttattttt 8441541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 8450280 - 8450345
Alignment:
Q  29 agttatttgagattacttttgtccaagcctgataaaggtgtacaattgaaaagatttatttattttt 95  Q
    ||||||||| |||||||||||||||| | || | |||||||||||||| |||||||| |||||||||    
T  8450280 agttatttgggattacttttgtccaaacttggtcaaggtgtacaattggaaagattt-tttattttt 8450345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 8442132 - 8442184
Alignment:
Q  245 tttttatttttaagaaatcaaattaacccatcaaaattaacatgtgggagaat 297  Q
    ||||| |||||||||||||||||||||| |||||||||| || ||| ||||||    
T  8442132 tttttttttttaagaaatcaaattaacctatcaaaattagcacgtgagagaat 8442184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 8450936 - 8450988
Alignment:
Q  245 tttttatttttaagaaatcaaattaacccatcaaaattaacatgtgggagaat 297  Q
    ||||| |||||||||||||||||||||| |||||||||| || ||| ||||||    
T  8450936 tttttttttttaagaaatcaaattaacctatcaaaattagcacgtgagagaat 8450988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 14126794 - 14126741
Alignment:
Q  244 atttttatttttaagaaatcaaattaacccatcaaaattaacatgtgggagaat 297  Q
    |||||| |||||||||| |||||| ||||||| |||||||||||| | ||||||    
T  14126794 atttttttttttaagaagtcaaatgaacccattaaaattaacatgggagagaat 14126741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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