View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3243_low_5 (Length: 257)
Name: NF3243_low_5
Description: NF3243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3243_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 15046891 - 15047132
Alignment:
| Q |
16 |
atgtcacaatatagtaaacaagaaattaaactacctttcaatctgcttaattaaatgtcaatctgaagatcaaagcgcatacaatcagaaagtttgggat |
115 |
Q |
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| T |
15046891 |
atgtcacaatatagtaaacaagaaattaaactacctttcaatctgcttaattaaatgtcaatctgaagatcaaagcgcatacaatcagaaagtttgggat |
15046990 |
T |
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| Q |
116 |
gaaatctgattaattagagttgataagtagttaagagttgttatagaagctagttgggttgttgagtttgttatagggctattgtataagtaggagaata |
215 |
Q |
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| T |
15046991 |
gaaatctgattaattagagttgataagtagttaagagttgttatagaagctagttgggttgttgagtttgttatagggctattgtataagtaggagaata |
15047090 |
T |
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| Q |
216 |
caatgtagagtttatctttattgaatattgtaaccatttttt |
257 |
Q |
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| T |
15047091 |
caatgtagagtttatctttattgaatattgtaaccatttttt |
15047132 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 40020859 - 40020777
Alignment:
| Q |
166 |
tagttgggttgttgagtttgttatagggctatt-gtataagtaggagaatacaatgtagagtttatctttattgaatattgtaa |
248 |
Q |
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| T |
40020859 |
tagttggttagttgaggttgttataggactatttgtataaataggagaa-acaatgtagagttgatcattattgaatattgtaa |
40020777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 16502327 - 16502372
Alignment:
| Q |
199 |
gtataagtaggagaatacaatgtagagtttatctttattgaatatt |
244 |
Q |
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| T |
16502327 |
gtataactaggggaatacaatgtagagttgatcattattgaatatt |
16502372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 39718960 - 39719059
Alignment:
| Q |
156 |
ttatagaagctagttgggttgttgagtttgttatagggctatt-gtataagtaggagaatacaatgtagagtttatctttattgaatattgtaaccattt |
254 |
Q |
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| T |
39718960 |
ttatagaagttagttagttatttgaggttgttatagggctatttgtatgaacaggagaatgcaatgtacagttgatcatcattgaatattgtaatcattt |
39719059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 170
Target Start/End: Complemental strand, 17079384 - 17079354
Alignment:
| Q |
140 |
aagtagttaagagttgttatagaagctagtt |
170 |
Q |
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| T |
17079384 |
aagtagttaagagttgttatagaagctagtt |
17079354 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 32792025 - 32791980
Alignment:
| Q |
125 |
ttaattagagttgataagtagttaagagttgttatagaagctagtt |
170 |
Q |
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| T |
32792025 |
ttaattagagttgtaaagcagttaagagttgttatagaagttagtt |
32791980 |
T |
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