View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3243_low_6 (Length: 238)

Name: NF3243_low_6
Description: NF3243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3243_low_6
NF3243_low_6
[»] chr5 (6 HSPs)
chr5 (1-221)||(15047125-15047345)
chr5 (12-125)||(31673978-31674092)
chr5 (30-70)||(19176270-19176310)
chr5 (174-221)||(17879560-17879607)
chr5 (156-221)||(14773115-14773180)
chr5 (135-215)||(15014498-15014578)
[»] chr4 (7 HSPs)
chr4 (24-129)||(16502582-16502687)
chr4 (24-128)||(40020645-40020753)
chr4 (32-126)||(3140304-3140396)
chr4 (151-212)||(54157176-54157236)
chr4 (87-126)||(3479149-3479188)
chr4 (86-129)||(17902193-17902235)
chr4 (31-70)||(51556668-51556707)
[»] chr2 (5 HSPs)
chr2 (24-129)||(37422857-37422961)
chr2 (24-128)||(34957866-34957971)
chr2 (31-123)||(28104433-28104524)
chr2 (34-72)||(13728636-13728674)
chr2 (32-72)||(25836269-25836309)
[»] chr8 (7 HSPs)
chr8 (24-125)||(32531265-32531367)
chr8 (24-127)||(45000097-45000199)
chr8 (84-129)||(20185631-20185676)
chr8 (84-129)||(20204698-20204743)
chr8 (24-70)||(7872033-7872079)
chr8 (32-129)||(38341830-38341926)
chr8 (84-128)||(16515205-16515249)
[»] chr7 (5 HSPs)
chr7 (9-128)||(25957384-25957503)
chr7 (84-129)||(44289210-44289255)
chr7 (85-128)||(44241363-44241406)
chr7 (31-71)||(6753379-6753419)
chr7 (96-128)||(27572545-27572577)
[»] chr3 (4 HSPs)
chr3 (83-128)||(42691770-42691815)
chr3 (24-121)||(31148624-31148721)
chr3 (86-128)||(7023504-7023546)
chr3 (86-126)||(47972662-47972702)
[»] chr6 (1 HSPs)
chr6 (25-125)||(10525226-10525324)
[»] chr1 (6 HSPs)
chr1 (30-70)||(716392-716432)
chr1 (25-130)||(17079184-17079287)
chr1 (84-130)||(33354199-33354245)
chr1 (30-70)||(30029368-30029408)
chr1 (30-128)||(11046910-11047004)
chr1 (86-128)||(11125147-11125189)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15047125 - 15047345
Alignment:
Q  1 cattttttaatagagtagcaagcctattttgaaggggaaacccctggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttct 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15047125 cattttttaatagagtagcaagtctattttgaaggggaaacccttggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttct 15047224  T
Q  101 ttggaatccaattcttgggttcctaacaaagtcataattccaagacatgccattcaccacattagatatctatttatctaatccatccaacaattattta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15047225 ttggaatccaattcttgggttcctaacaaagtcataattccaagacatgccattcaccacattagatatctatttatctaatccatccaacaattattta 15047324  T
Q  201 tatcaatatgcatgtagaatt 221  Q
    |||||||||||||||||||||    
T  15047325 tatcaatatgcatgtagaatt 15047345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 31673978 - 31674092
Alignment:
Q  12 agagtagcaagcctattttgaaggggaaacccctggaggagagatttctctcctat--tcttttctacttatcaataaaagtgttctttctttggaatcc 109  Q
    ||||||||||  ||||| |||||||||| ||| ||||||||||| |||||||||||  | | | ||| || | |||||||||||||| |||||||||| |    
T  31673978 agagtagcaactctattgtgaaggggaaccccttggaggagaga-ttctctcctattatatatcctattttttaataaaagtgttctatctttggaattc 31674076  T
Q  110 aattcttgggttccta 125  Q
    || | |||||||||||    
T  31674077 aacttttgggttccta 31674092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 19176270 - 19176310
Alignment:
Q  30 tgaaggggaaacccctggaggagagatttctctcctattct 70  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  19176270 tgaaggggaaacccttggaggagagatttctttcctattct 19176310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 17879560 - 17879607
Alignment:
Q  174 ttatctaatccatccaacaattatttatatcaatatgcatgtagaatt 221  Q
    |||||||| | |||||||||||||||| | ||||||||||||||||||    
T  17879560 ttatctaaccaatccaacaattatttaaaacaatatgcatgtagaatt 17879607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 14773115 - 14773180
Alignment:
Q  156 accacattagatatctatttatctaatccatccaacaattatttatatcaatatgcatgtagaatt 221  Q
    ||||||| | |||||||||||||||| ||||| |||||| |  || ||||||||||||||| ||||    
T  14773115 accacataaaatatctatttatctaacccatcaaacaatgaagtacatcaatatgcatgtacaatt 14773180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 15014498 - 15014578
Alignment:
Q  135 taattccaagacatgccattcaccacattagatatctatttatctaatccatccaacaattatttatatcaatatgcatgt 215  Q
    |||||||||||  || || |||||||  || |||||||||||||||| ||||||| || |||| || | ||||||||||||    
T  15014498 taattccaagatgtgtcactcaccacgataaatatctatttatctaacccatccagcagttatgtacagcaatatgcatgt 15014578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 16502582 - 16502687
Alignment:
Q  24 ctattttgaaggggaaacccctggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcc 123  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| |  || || | |||| |||||||||||||   ||||||||||||||||||||    
T  16502582 ctattgtgaaggggaaacccttggaggagagatttctctcctattctatcatatttcttaatataagtgttctttctaaagaatccaattcttgggttcc 16502681  T
Q  124 taacaa 129  Q
    ||||||    
T  16502682 taacaa 16502687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 40020753 - 40020645
Alignment:
Q  24 ctattttgaaggggaaacccctggaggagagatttctctcc-tattcttttctacttatc---aataaaagtgttctttctttggaatccaattcttggg 119  Q
    ||||| |||||||||| ||| || ||||||||||| ||||| |||||||| ||| || |    ||||||||||||||||||| |||||||||||||||||    
T  40020753 ctattgtgaaggggaatcccttgaaggagagatttatctccctattctttcctattttttcttaataaaagtgttctttcttaggaatccaattcttggg 40020654  T
Q  120 ttcctaaca 128  Q
    |||||||||    
T  40020653 ttcctaaca 40020645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 3140396 - 3140304
Alignment:
Q  32 aaggggaaacccctggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcctaa 126  Q
    |||||||||||| || |||||||||| |||||||||||| |  || || | ||  |||||||| |||||||||||||||||||||||||||||||    
T  3140396 aaggggaaacccttg-aggagagatt-ctctcctattctatcatatttcttaaataaagtgttgtttctttggaatccaattcttgggttcctaa 3140304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 54157176 - 54157236
Alignment:
Q  151 cattcaccacattagatatctatttatctaatccatccaacaattatttatatcaatatgca 212  Q
    |||||||||||||| ||| |||||||||||| ||||||||||||||| || | |||||||||    
T  54157176 cattcaccacattaaatagctatttatctaa-ccatccaacaattatgtaaagcaatatgca 54157236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 3479188 - 3479149
Alignment:
Q  87 aaagtgttctttctttggaatccaattcttgggttcctaa 126  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  3479188 aaagtgttctttcttttgaattcaattcttgggttcctaa 3479149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 17902235 - 17902193
Alignment:
Q  86 aaaagtgttctttctttggaatccaattcttgggttcctaacaa 129  Q
    |||||||||||||||||||||||||||| ||| |||||||||||    
T  17902235 aaaagtgttctttctttggaatccaatt-ttgtgttcctaacaa 17902193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 51556668 - 51556707
Alignment:
Q  31 gaaggggaaacccctggaggagagatttctctcctattct 70  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  51556668 gaaggggaaacccttggaggagagttttctctcctattct 51556707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 37422961 - 37422857
Alignment:
Q  24 ctattttgaaggggaaacccctggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcc 123  Q
    ||||| |||||| ||||||| ||||||||||||| |||||||||||| | ||| || |  |||||||||||||||||||||||| ||||| |||||||||    
T  37422961 ctattgtgaaggtgaaacccttggaggagagatt-ctctcctattctatcctatttcttcataaaagtgttctttctttggaattcaatttttgggttcc 37422863  T
Q  124 taacaa 129  Q
    ||||||    
T  37422862 taacaa 37422857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 34957971 - 34957866
Alignment:
Q  24 ctattttgaaggggaaacccctggaggagagatttctctcctattcttttctacttatcaat-aaaagtgttctttctttggaatccaattcttgggttc 122  Q
    ||||| |||||| | ||||| |||||||||||||||||||||||| ||| ||| || |  || |||||||||| ||||||||||||||||| ||||||||    
T  34957971 ctattgtgaaggtgtaacccttggaggagagatttctctcctattatttcctatttctttattaaaagtgttcgttctttggaatccaattattgggttc 34957872  T
Q  123 ctaaca 128  Q
    ||||||    
T  34957871 ctaaca 34957866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 28104524 - 28104433
Alignment:
Q  31 gaaggggaaacccctggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcc 123  Q
    |||||| ||| || ||||||| ||||||||||| |||||||| |||  | | |||||||| |||||||| |||||||||| ||||||||||||    
T  28104524 gaagggaaaatccttggaggaaagatttctctcgtattctttcctatctcttaataaaagagttctttc-ttggaatccagttcttgggttcc 28104433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 13728636 - 13728674
Alignment:
Q  34 ggggaaacccctggaggagagatttctctcctattcttt 72  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  13728636 ggggaaacccttggaggagatatttctctcctattcttt 13728674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 25836309 - 25836269
Alignment:
Q  32 aaggggaaacccctggaggagagatttctctcctattcttt 72  Q
    |||||||||||| |||||||||| |||||||| ||||||||    
T  25836309 aaggggaaacccttggaggagagttttctctcgtattcttt 25836269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 32531265 - 32531367
Alignment:
Q  24 ctattttgaaggggaaacccctggaggagagatttctctcctattcttttcta-cttatcaataaaagtgttctttctttggaatccaattcttgggttc 122  Q
    ||||| ||||||||||| || |||||||||||||| |||||||||| ||||||  || | ||| ||| |||||||||||||||||| |||||||||||||    
T  32531265 ctattgtgaaggggaaatccttggaggagagatttttctcctattcctttctattttcttaatcaaattgttctttctttggaatcaaattcttgggttc 32531364  T
Q  123 cta 125  Q
    |||    
T  32531365 cta 32531367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 45000199 - 45000097
Alignment:
Q  24 ctattttgaaggggaaacccctggaggagagatttctctcctattcttttctacttatcaataaaagtgttc-tttctttggaatccaattcttgggttc 122  Q
    ||||| |||||||||||||| || |||||| ||| ||||||| |||| | ||| || | ||||||| ||||  |||||||||||||||||||||||||||    
T  45000199 ctattgtgaaggggaaacccttg-aggagatatt-ctctcctgttctatcctatttcttaataaaattgttaatttctttggaatccaattcttgggttc 45000102  T
Q  123 ctaac 127  Q
    |||||    
T  45000101 ctaac 45000097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 20185676 - 20185631
Alignment:
Q  84 ataaaagtgttctttctttggaatccaattcttgggttcctaacaa 129  Q
    |||||| |||| |||||||||||| |||||||||||||||||||||    
T  20185676 ataaaattgttatttctttggaattcaattcttgggttcctaacaa 20185631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 20204743 - 20204698
Alignment:
Q  84 ataaaagtgttctttctttggaatccaattcttgggttcctaacaa 129  Q
    |||||| |||| |||||||||||| |||||||||||||||||||||    
T  20204743 ataaaattgttatttctttggaattcaattcttgggttcctaacaa 20204698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 7872033 - 7872079
Alignment:
Q  24 ctattttgaaggggaaacccctggaggagagatttctctcctattct 70  Q
    ||||| |||||||||||||| |||||| |||||||||||| ||||||    
T  7872033 ctattgtgaaggggaaacccttggaggggagatttctctcatattct 7872079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 38341926 - 38341830
Alignment:
Q  32 aaggggaaacccctggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcctaacaa 129  Q
    |||||||||||| ||||||||||| || ||||| ||||||| ||| || | | |||||||||||||||| |   || ||||| |||||||| ||||||    
T  38341926 aaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaa 38341830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 16515205 - 16515249
Alignment:
Q  84 ataaaagtgttctttctttggaatccaattcttgggttcctaaca 128  Q
    |||||| |||| ||||||||||||||||| ||||| |||||||||    
T  16515205 ataaaattgttatttctttggaatccaatgcttggcttcctaaca 16515249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 25957503 - 25957384
Alignment:
Q  9 aatagagtagcaagcctattttgaaggggaaacccctggaggagagatttctctcctattcttttctactta-tcaataaaagtgttctttctttggaat 107  Q
    |||||||||||||   |||| |||||||||||||| || |||| ||||||||||| ||||| |||||| ||  | ||| ||||||||||||||  |||||    
T  25957503 aatagagtagcaactttattgtgaaggggaaacccttg-aggaaagatttctctcttattcctttctattttcttaatcaaagtgttctttctcaggaat 25957405  T
Q  108 ccaattcttgggttcctaaca 128  Q
    ||||||||| |||||||||||    
T  25957404 ccaattctttggttcctaaca 25957384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 44289255 - 44289210
Alignment:
Q  84 ataaaagtgttctttctttggaatccaattcttgggttcctaacaa 129  Q
    |||||| |||| |||||||||||| |||||||||||||||||||||    
T  44289255 ataaaattgttatttctttggaattcaattcttgggttcctaacaa 44289210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 44241406 - 44241363
Alignment:
Q  85 taaaagtgttctttctttggaatccaattcttgggttcctaaca 128  Q
    ||||| |||| |||||||||||||||||| ||||||||||||||    
T  44241406 taaaattgttatttctttggaatccaattattgggttcctaaca 44241363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 6753379 - 6753419
Alignment:
Q  31 gaaggggaaacccctggaggagagatttctctcctattctt 71  Q
    |||| |||||||| ||||||||||| |||||||||||||||    
T  6753379 gaagaggaaacccttggaggagagacttctctcctattctt 6753419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 27572545 - 27572577
Alignment:
Q  96 tttctttggaatccaattcttgggttcctaaca 128  Q
    ||||||||||||||||| |||||||||||||||    
T  27572545 tttctttggaatccaatccttgggttcctaaca 27572577  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 42691815 - 42691770
Alignment:
Q  83 aataaaagtgttctttctttggaatccaattcttgggttcctaaca 128  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  42691815 aataaaagtgttctttctttggaatccgattcttgggttcctaaca 42691770  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 31148721 - 31148624
Alignment:
Q  24 ctattttgaaggggaaacccctggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggtt 121  Q
    ||||| |||||| ||||||  ||||||||||||||||||||||||||||   | || | |||||| | |||||||||| | |||  ||||||||||||    
T  31148721 ctattgtgaaggagaaaccgttggaggagagatttctctcctattctttcacatttcttaataaaggcgttctttcttagaaattgaattcttgggtt 31148624  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 7023546 - 7023504
Alignment:
Q  86 aaaagtgttctttctttggaatccaattcttgggttcctaaca 128  Q
    |||||| || |||||||||||||||| ||||||||||||||||    
T  7023546 aaaagtattatttctttggaatccaactcttgggttcctaaca 7023504  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 47972702 - 47972662
Alignment:
Q  86 aaaagtgttctttctttggaatccaattcttgggttcctaa 126  Q
    |||||||||||||||||||||||| ||  ||||||||||||    
T  47972702 aaaagtgttctttctttggaatccgatatttgggttcctaa 47972662  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 10525324 - 10525226
Alignment:
Q  25 tattttgaaggggaaacccctggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcct 124  Q
    |||| |||||||||||||| || ||||||||||| |||| |||||| | | | || | ||||||| |||| | |||||||||||||||||||||||||||    
T  10525324 tattgtgaaggggaaacccttg-aggagagattt-tctcgtattctatccaatttcttaataaaattgttatatctttggaatccaattcttgggttcct 10525227  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 716392 - 716432
Alignment:
Q  30 tgaaggggaaacccctggaggagagatttctctcctattct 70  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  716392 tgaaggggaaacccctggaggagagatttttctcctattct 716432  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 17079287 - 17079184
Alignment:
Q  25 tattttgaaggggaaacccctggag---gagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggtt 121  Q
    |||| |||||||||||||| |||||   ||||||||||||||||||||||| |||  | | ||     ||||| ||||||| |||||||||| |||||||    
T  17079287 tattgtgaaggggaaacccttggagccggagagatttctctcctattctttcctatctcttaa-----gtgttttttctttcgaatccaatttttgggtt 17079193  T
Q  122 cctaacaaa 130  Q
    |||||||||    
T  17079192 cctaacaaa 17079184  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 33354245 - 33354199
Alignment:
Q  84 ataaaagtgttctttctttggaatccaattcttgggttcctaacaaa 130  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||    
T  33354245 ataaaagggttctttctttggaatccaattcttggatttctaacaaa 33354199  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 30029368 - 30029408
Alignment:
Q  30 tgaaggggaaacccctggaggagagatttctctcctattct 70  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  30029368 tgaaggggaaacccttggaggagagatttctctcatattct 30029408  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 11046910 - 11047004
Alignment:
Q  30 tgaaggggaaacccctggaggagagatttctctcctattcttttcta-cttatcaataaaagtgttctttctttggaatccaattcttgggttcctaaca 128  Q
    |||||||||||||| ||||| |||||||| ||||||||||||| |||  || | |||||||| |||||| ||| ||     |||||||||||||||||||    
T  11046910 tgaaggggaaacccttggagtagagatttatctcctattctttcctattttcttaataaaagagttcttccttagg-----aattcttgggttcctaaca 11047004  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 11125189 - 11125147
Alignment:
Q  86 aaaagtgttctttctttggaatccaattcttgggttcctaaca 128  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  11125189 aaaagtgttatttcattggaatccaactcttgggttcctaaca 11125147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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