View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3243_low_7 (Length: 224)
Name: NF3243_low_7
Description: NF3243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3243_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 28453489 - 28453686
Alignment:
| Q |
12 |
cacagagacaaatatttaaccttatcaagcaactgaggcatcgacttctccttatgattaaaaaccatgtcatttcactcttgtcagataacccacacat |
111 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28453489 |
cacaaagacaaatatttaaccttatcaagtaactgaggcatcgacttctcctaatgattaaaaaccatgtcatttcactcttgtcagataacccacacat |
28453588 |
T |
|
| Q |
112 |
aggtaaaacaaataaagggcataaaagactgcctcgctttcgaaccccctgtcaagatagcataatgatcaaaatggttcgaaatagagcgagggttt |
209 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28453589 |
aggtaaaacaaatatagggcataaaagactgcctcgctttcgaaccccctgtcaagatagcataatgatcaaaatggttcgaaatagagcgagggttt |
28453686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 35947360 - 35947535
Alignment:
| Q |
12 |
cacagagacaaatatttaaccttatcaagcaactgaggcatcgacttctccttatgattaaaaaccatgtcatttcactcttgtcagataacccacacat |
111 |
Q |
| |
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|||| |||||||||||||||| |||||| |||||||| | |||| || ||||||| |||||||| | ||||||||||||||||||||||||| ||||| |
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| T |
35947360 |
cacaaagacaaatatttaaccatatcaaacaactgagacgtcgatttttccttataattaaaaaacctgtcatttcactcttgtcagataactcacac-- |
35947457 |
T |
|
| Q |
112 |
aggtaaaacaaataaagggcataaaagactgcctcgctttcgaaccccctgtcaagatagcataatgatcaaaatggt |
189 |
Q |
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||| ||| |||| ||| || || |||| | |||||||||| ||||||| |||| |||| ||||||||| ||||||| |
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|
| T |
35947458 |
aggaaaactaaattaagttcaaaagagaccgtctcgctttcgcaccccctatcaatatagtataatgatcgaaatggt |
35947535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 17401154 - 17401042
Alignment:
| Q |
12 |
cacagagacaaatatttaaccttatcaagcaactgaggcatcgacttctccttatgattaaaaaccatgtcatttcactcttgtcagataacccacacat |
111 |
Q |
| |
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|||| |||||||| |||||||||||||| ||| | ||||||| | ||||||||||||||||| | | ||||| |||||||||| ||||||||||||||| |
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| T |
17401154 |
cacaaagacaaatgtttaaccttatcaaacaattaaggcatcaatttctccttatgattaaacaacttgtcagttcactcttgccagataacccacacac |
17401055 |
T |
|
| Q |
112 |
aggtaaaacaaat |
124 |
Q |
| |
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|||||| ||||| |
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| T |
17401054 |
cggtaaaccaaat |
17401042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 4111057 - 4111247
Alignment:
| Q |
12 |
cacagagacaaatatttaaccttatcaagcaactgaggcatcgacttctccttatgattaaaaacca-tgtcatttcactcttgtcagataacccacaca |
110 |
Q |
| |
|
|||| |||||||||||||||||| | ||| |||||| |||| ||||||||||||||||||||||| | |||||||||||||| || |||||||||||| |
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| T |
4111057 |
cacaaagacaaatatttaaccttgttaagaaactgatgcataaacttctccttatgattaaaaacccctatcatttcactcttgccaaataacccacaca |
4111156 |
T |
|
| Q |
111 |
taggtaaaacaaataaagggcataaaagactgcctcgctttcgaaccccctgtcaagatagcataatgatcaaaatggttcgaaatagagc |
201 |
Q |
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| ||||| ||||| ||| || |||||| | | |||||||||||| || |||| |||||||||||||||||||||| ||||||||||| |
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| T |
4111157 |
caagtaaaccaaattaagtgcgaaaaagatcgatttgctttcgaaccctctctcaatatagcataatgatcaaaatggtccgaaatagagc |
4111247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 11096866 - 11096703
Alignment:
| Q |
23 |
atatttaaccttatcaagcaactgaggcatcgacttctccttatgattaaaaaccatgtcatttcactcttgtcagataacccacacataggtaaaacaa |
122 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||| ||||||||| ||||| |||| ||||||||| ||||||| ||| |
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| T |
11096866 |
atatttaaccttatcaaacaactaaggcatcgaatactccttatgattaaaaaccttgtcatttcgctcttactagatgacccacacacaggtaaagcaa |
11096767 |
T |
|
| Q |
123 |
ataaagggcataaaagactgcctcgctttcgaaccccctgtcaagatagcataatgatcaaaat |
186 |
Q |
| |
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|| ||| ||| |||||| || |||||||||||||| ||| | |||||||||||||| |||| |
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|
| T |
11096766 |
attaagtgcaaaaaagatcgcaccgctttcgaaccccatgttgacatagcataatgatcgaaat |
11096703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 9371794 - 9371982
Alignment:
| Q |
12 |
cacagagacaaatatttaaccttatcaagcaactgaggcatcgacttctccttatgattaaaaaccatgtcatttcactcttgtcagataacccacacat |
111 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||| ||| ||||| || ||||||||||||||| | | ||||||| |||||||||||||||||||||| |
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| T |
9371794 |
cacaaagacaaatatttaactttattaagcaattgatgcatcattttatccttatgattaaaagctaggtcattttggtcttgtcagataacccacacat |
9371893 |
T |
|
| Q |
112 |
aggtaaaacaaataaagggcataaaagactgcctcgctttcgaaccccctgtcaagatagcataatgatcaaaatggttcgaaatagagc |
201 |
Q |
| |
|
||||||| ||||| ||| ||| |||||| |||| |||||||| |||| |||| |||| ||||| || |||||||| |||||||||| |
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| T |
9371894 |
aggtaaaccaaattaagtgcaaaaaagagcacctccctttcgaa-ccccgatcaatatagtataataattgaaatggtttgaaatagagc |
9371982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 39614165 - 39613997
Alignment:
| Q |
12 |
cacagagacaaatatttaaccttatcaagcaactgaggcatcgacttctccttatgattaaaaaccatgtcatttcactcttgtcagataacccacacat |
111 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| |||| |||| | |||||| |||||||||||||| ||||||||| |||||| || ||||| |||||| |
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| T |
39614165 |
cacaaagataaatatttaaccttatcaagcagttgagacatcaatttctccgtatgattaaaaaccctgtcatttcgctcttgccatataactcacacac |
39614066 |
T |
|
| Q |
112 |
aggtaaaacaaataaagggcataaaagactgcctcgctttcgaaccccctgtcaagatagcataatgat |
180 |
Q |
| |
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| ||||| ||||| || | | |||||| || || |||| |||||||| ||||| ||||||||||||| |
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| T |
39614065 |
atgtaaaccaaattaaatgaaaaaaagagcgcttcacttttgaacccccggtcaatatagcataatgat |
39613997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 16597501 - 16597436
Alignment:
| Q |
12 |
cacagagacaaatatttaaccttatcaa-gcaactgaggcatcgacttctccttatgattaaaaac |
76 |
Q |
| |
|
|||| ||||||||||||||| ||||||| | ||||||| ||||||||||||||||||||| ||||| |
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|
| T |
16597501 |
cacaaagacaaatatttaactttatcaaagtaactgagacatcgacttctccttatgatttaaaac |
16597436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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