View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3244_high_1 (Length: 461)
Name: NF3244_high_1
Description: NF3244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3244_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Complemental strand, 48922945 - 48922506
Alignment:
| Q |
17 |
aaaagtaatggtcagttatcttcgagcaccaaaactatttttattgatcaaactgatacagaaaaattgaagtaagaaatatgacataacattactaatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48922945 |
aaaagtaatggtcagttatcttcgagcaccaaaactatttttattgatcaaactgatacagaaaaattgaagtaagaaatatgacataacattactaatt |
48922846 |
T |
|
| Q |
117 |
ttatacttctatttatctgttgctctttatgcagcatatacaaaaaataagaagttgcagattaactgcagcacatgttgttaactcatcttagtttagc |
216 |
Q |
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| T |
48922845 |
ttatacttctatttatctgttgctctttatgcagcatatacaaaaaataagaagttgcagattaactgcagcacatgttgttaactcatcttagtttagc |
48922746 |
T |
|
| Q |
217 |
acttgaacatgtatatatttgttcaccaataatctaatcattatcaatgtaaacttcgttaattagtgtccattatatatgaaatgcttatctagaaatc |
316 |
Q |
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| T |
48922745 |
acttgaacatgtatatatttgttcaccaataatctaatcattatcaatgtaaacttcgttaattagtgtccattatatatgaaatgcttatctagaaatc |
48922646 |
T |
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| Q |
317 |
ccttttgcatttattatctctttccttatacaactctgataaacttgtaggattctatctcaagatttttgttacatgaaacaaagctcctgctttgtag |
416 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48922645 |
ccttctgcatttattatctctttccttttacaactctgataaacttgtaggattctatctcaagatttttgttacatgaaacaaagctcctgctttgtag |
48922546 |
T |
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| Q |
417 |
tttgtatgacgcttcatgaaaggatcgaattcatctcact |
456 |
Q |
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| T |
48922545 |
tttgtatgacgcttcatggaaggatcgaattcacctcact |
48922506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 48876383 - 48876422
Alignment:
| Q |
197 |
ttaactcatcttagtttagcacttgaacatgtatatattt |
236 |
Q |
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| T |
48876383 |
ttaactcatcttagtttagcacttgaacatgcatgtattt |
48876422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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