View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3244_high_3 (Length: 294)
Name: NF3244_high_3
Description: NF3244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3244_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 5206888 - 5207156
Alignment:
| Q |
11 |
cacagaatctggtttgttgatgctgttattcatttgttgttaannnnnnnatacatctttttcatgtcttctattgatgcttaacaagtgtatttttcca |
110 |
Q |
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| T |
5206888 |
cacagaaactggtttgttgatgctgttattcatttgttgttaatttttttatacatctttttcatgtcttctattgatgcttaacaagtgtatttttcca |
5206987 |
T |
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| Q |
111 |
tctacatttcatataggatgttgatgcagttgataaaatttgtgaagaaatagaagaggaggaatgcttgatgaggaggacacttgttgctcataccgac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5206988 |
tctacatttcatataggatgttgatgcagttgataaaatttgtgaagaaatagaagaggaggaatgcttgatgaggaggacacttgttgctcataccgac |
5207087 |
T |
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| Q |
211 |
tatatttatacgcagaagcataacccttgaaacaatcttcaccctccttgttttcatcacttatatatt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5207088 |
tatatttatacgcagaagcataacccttgaaacaatcttcaccctccttgttttcatcacttatatatt |
5207156 |
T |
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