View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3244_high_5 (Length: 268)
Name: NF3244_high_5
Description: NF3244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3244_high_5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 18477616 - 18477368
Alignment:
| Q |
15 |
gaaagcaaggagaatcacgtatctctaagaccaaccttccttcatataacaattgtaattaaagcagcaacatgtagctttatcttcatgactaacctat |
114 |
Q |
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| T |
18477616 |
gaaagcaaggagaatcatgtatctctaagaccaaccttccttcatataacaattgtaattaaagcagcaacatgtacctttatcttcatgactaacct-- |
18477519 |
T |
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| Q |
115 |
acttctaattacaattgcaattaaagaaatgtcaccttgaaatttgcgatcaagcacatctgcgaaaacgacaattggattcaatcacgaaagcggcaaa |
214 |
Q |
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| T |
18477518 |
---tctaataacaattgcaattaaagaaatgtcaccttgaaatttgcgatcaagcacatctgcgaaaacgacaattggattcaatcacgaaagcggcaaa |
18477422 |
T |
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| Q |
215 |
tgatacggccataagatgacggaaaattatgatagaaatcgcacaaggcaaatc |
268 |
Q |
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| T |
18477421 |
tgatacaaccataagatgacggaaaattatgatagaaatagcacaaggcaaatc |
18477368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 109 - 268
Target Start/End: Original strand, 19061092 - 19061252
Alignment:
| Q |
109 |
acctatacttctaattacaattgcaattaaagaaatgtcaccttgaaatttgcgatcaagcacatctgcgaaaacgacaattggattcaatcacgaaagc |
208 |
Q |
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| T |
19061092 |
acctttacttctaataacaattgcaattaaagaaatgtcaccttgaaatttgcgatcaagcacatctgcgaaaacgacaattggattcaatcacgaaagt |
19061191 |
T |
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| Q |
209 |
ggcaaatgatacggccataagatgacggaaaattatgata-gaaatcgcacaaggcaaatc |
268 |
Q |
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| T |
19061192 |
ggcaaatgatacaaccataagatgatggaaaattatgataggaaatagcacaaggcaaatc |
19061252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 19061058 - 19061092
Alignment:
| Q |
56 |
tcatataacaattgtaattaaagcagcaacatgta |
90 |
Q |
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| T |
19061058 |
tcatataacaattgtaattaaagtagcaacatgta |
19061092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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