View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3244_high_6 (Length: 260)
Name: NF3244_high_6
Description: NF3244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3244_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 12559794 - 12559558
Alignment:
| Q |
14 |
catatgtatggtttttcaatcttcattaaattaactatgagatcacattttaatatattatgcatctttcatatcaatgttgtaattttgagataaaagc |
113 |
Q |
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| T |
12559794 |
catatgtatggtttttcaatcttcattaaattaactatgagatcacattttaatatattatgcatctttcatatcaatgttgtaattttgagataaaagc |
12559695 |
T |
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| Q |
114 |
acatgtttgacccagtaatattggtctgtgtcttgtgttttggttgtctggcatcacttgttccatgactgttgatcaatgttattagtaaatattattg |
213 |
Q |
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| T |
12559694 |
acatgtttgacccagtaatattggtctgtgtcttgtgttttggttgtctggcatcatttgtttcttgactattgatcaatgttatttgtaaatattattg |
12559595 |
T |
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| Q |
214 |
tattcattgccttggaattttcacatatctccctatg |
250 |
Q |
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| T |
12559594 |
tattcattgccttggaattttcacatatcaccctatg |
12559558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 9291815 - 9291955
Alignment:
| Q |
14 |
catatgtatggtttttcaatcttcattaaattaactatgagatcacattttaatatattatgcatctttcatatcaatgttgtaattttgagataaaagc |
113 |
Q |
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| T |
9291815 |
catatttatgatttttcaatcattattaaatcatttttgagattaaatattaatatcttataaatatttcatatcaaagttgtaattttgagacagaggg |
9291914 |
T |
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| Q |
114 |
acatgtttgacccagtaatattggtctgtgtcttgtgtttt |
154 |
Q |
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| T |
9291915 |
acacgtttgaaccagtaattttggtttgtatcttgagtttt |
9291955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 12556504 - 12556454
Alignment:
| Q |
14 |
catatgtatggtttttcaatcttcattaaattaactatgagatcacatttt |
64 |
Q |
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| T |
12556504 |
catatgtatggtttttcaatctttattaaattagctttgtgatcacatttt |
12556454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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