View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3244_high_8 (Length: 239)
Name: NF3244_high_8
Description: NF3244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3244_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 35800013 - 35799788
Alignment:
| Q |
4 |
ggtttgctatttcgaattgaatatctagaaatcatctcttggtgaaacgttgttaagaaaaccctatgccattaaattgcttattcttgtatgcagctaa |
103 |
Q |
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| T |
35800013 |
ggtttgctatttcgaattgaatatctagaaatcatctcttggtgaaacgttgttaagaaaaccctatgccattaaattgcttattcttgtatgcagctaa |
35799914 |
T |
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| Q |
104 |
attgtgtatctttttgtacatgaatctgttttgattatggttatatttgatctgaaaatgtcttgattttggccatgttcaaggagatgtttattggtta |
203 |
Q |
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| T |
35799913 |
attgtgtatctttttgtacatgaatctgttttgattatggttatatttgatctgaaaatgtcttgattttggccatgttcaaggagatgtttattggtta |
35799814 |
T |
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| Q |
204 |
gacttaaaatcgcctgatgatgatgt |
229 |
Q |
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| T |
35799813 |
gacttaaaatcgcctgatgatgatgt |
35799788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 35786635 - 35786563
Alignment:
| Q |
115 |
ttttgtacatgaatctgttttgattatggttatatttgatctgaaaat-gtcttgattttggccatgttcaag |
186 |
Q |
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| T |
35786635 |
ttttgtacatgaaactattttgatttttgtttaatttgatctgaaaatggtcttgattttggcaatgttcaag |
35786563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 35790061 - 35789987
Alignment:
| Q |
120 |
tacatgaatctgttttgattatggt--tatattt-gatctgaaaatgtcttgattttggccatgttcaaggagat |
191 |
Q |
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| T |
35790061 |
tacatgaaactgttttgattatggtgttatattttgatcttataatgtcttgattttggctatgttcaagtagat |
35789987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 35756326 - 35756262
Alignment:
| Q |
141 |
tggttatatttgatctgaaaatgtcttgattttggccatgttcaaggagatgtttattggttaga |
205 |
Q |
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| T |
35756326 |
tggttacatttgatcagaaaatatattgattttggcgatgttcaagtaggtatctattggttaga |
35756262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 35761707 - 35761635
Alignment:
| Q |
115 |
ttttgtacatgaatctgttttgattatggttatatttgatctgaaaatg-tcttgattttggccatgttcaag |
186 |
Q |
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| T |
35761707 |
ttttgtacatgaaaccattttaagtttggttaaatttgatatgaaaatggtcttgattttggcaatgttcaag |
35761635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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