View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3244_low_10 (Length: 238)
Name: NF3244_low_10
Description: NF3244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3244_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41215198 - 41215417
Alignment:
| Q |
1 |
cctaagggaacaagag-ctaatcatcttataataatcaatagcaatattgcaatcatagaatgttgaactaatatttttaacatccattctttgccatgt |
99 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41215198 |
cctaagggaacaagaggctaatcatcttataataatcaatagcaatattgcaatcatagaatgttgaactaatatttttaacatccattgtttgccatgt |
41215297 |
T |
|
| Q |
100 |
agtagttttggtcaaaagtgggggtttggaatcatttgggtgcttaagatnnnnnnnttatgatcaaatctttttccttactgccctctccattaagggc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41215298 |
agtagttttggtcaaaagtgggggtttggaatcatttgggtgcttaagat--aaaaattatgatcaaatctttttccttactgccctctccattaagggc |
41215395 |
T |
|
| Q |
200 |
attgtctccctctatcttgtat |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
41215396 |
attgtctccctctatcttgtat |
41215417 |
T |
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