View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3244_low_5 (Length: 290)

Name: NF3244_low_5
Description: NF3244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3244_low_5
NF3244_low_5
[»] chr3 (1 HSPs)
chr3 (95-269)||(27094500-27094673)
[»] chr8 (2 HSPs)
chr8 (31-92)||(39190239-39190300)
chr8 (202-269)||(14916177-14916244)
[»] chr7 (2 HSPs)
chr7 (202-269)||(5348584-5348651)
chr7 (193-269)||(38880561-38880637)
[»] chr4 (1 HSPs)
chr4 (203-269)||(51888204-51888270)
[»] chr6 (2 HSPs)
chr6 (202-265)||(30493567-30493630)
chr6 (193-269)||(26588455-26588531)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 269
Target Start/End: Complemental strand, 27094673 - 27094500
Alignment:
Q  95 aaaaattgtcttgataactagtgtctttggagcattggttaataaatcgagaaaatagaaattatcattgaactataacttgttacatttgttgtaatgt 194  Q
    |||||||||||||||||| |||| |||||| | ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||| || |||||    
T  27094673 aaaaattgtcttgataaccagtgcctttggggtattggttaataaatcgataaa-tagaaatgatcattgaactataacttgttacttttgctgcaatgt 27094575  T
Q  195 tgacactcaaatcattgattgaattttatattgattcaaattgatctttcagtatgaaccaatcgaacaccgcaa 269  Q
    | || |||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  27094574 taacgctcaaatcattgattgaattttttattgattcaaatcgatctgtcagtatgaaccaatcgaacaccgcaa 27094500  T

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Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 39190300 - 39190239
Alignment:
Q  31 tttgcattttatctagcagtatacttccgatcgacctaaaactgatttttaagtatacttta 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39190300 tttgcattttatctagcagtatacttccgatcgacctaaaactgatttttaagtatacttta 39190239  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 14916177 - 14916244
Alignment:
Q  202 caaatcattgattgaattttatattgattcaaattgatctttcagtatgaaccaatcgaacaccgcaa 269  Q
    ||||||||||||||||| |   ||||||| || ||| ||||||| |||||||||| ||||||||||||    
T  14916177 caaatcattgattgaatctctgattgattgaagttggtctttcaatatgaaccaaacgaacaccgcaa 14916244  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 5348584 - 5348651
Alignment:
Q  202 caaatcattgattgaattttatattgattcaaattgatctttcagtatgaaccaatcgaacaccgcaa 269  Q
    ||||||||||||||||| |   ||||||| |||||||||||||| || ||||||| ||||||||||||    
T  5348584 caaatcattgattgaatctgtaattgattgaaattgatctttcaataggaaccaaacgaacaccgcaa 5348651  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 38880561 - 38880637
Alignment:
Q  193 gttgacactcaaatcattgattgaattttatattgattcaaattgatctttcagtatgaaccaatcgaacaccgcaa 269  Q
    |||| ||| |||||||||||||||||||   ||||| | ||  |||||||||| || ||||||| ||||||||||||    
T  38880561 gttggcacccaaatcattgattgaatttgtgattgactgaagctgatctttcaataagaaccaaacgaacaccgcaa 38880637  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 51888204 - 51888270
Alignment:
Q  203 aaatcattgattgaattttatattgattcaaattgatctttcagtatgaaccaatcgaacaccgcaa 269  Q
    |||||||||||| |||||   ||||||| || ||||||||||| |||||||||| ||||||||||||    
T  51888204 aaatcattgattaaatttgtgattgattgaagttgatctttcaatatgaaccaaacgaacaccgcaa 51888270  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 30493630 - 30493567
Alignment:
Q  202 caaatcattgattgaattttatattgattcaaattgatctttcagtatgaaccaatcgaacacc 265  Q
    ||||||||||||||||| | | ||||| | || ||||||||||| |||||||||| ||||||||    
T  30493630 caaatcattgattgaatatgagattgactgaagttgatctttcaatatgaaccaaacgaacacc 30493567  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 26588455 - 26588531
Alignment:
Q  193 gttgacactcaaatcattgattgaattttatattgattcaaattgatctttcagtatgaaccaatcgaacaccgcaa 269  Q
    |||||||  ||||||||| ||||||| |   ||||| | || ||||||||||| |||||||||| ||||||||||||    
T  26588455 gttgacatccaaatcattaattgaatgtgtgattgactgaagttgatctttcaatatgaaccaaacgaacaccgcaa 26588531  T

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