View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3245_high_1 (Length: 216)
Name: NF3245_high_1
Description: NF3245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3245_high_1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 34714586 - 34714390
Alignment:
| Q |
20 |
tacagcaaatatatttgagaactgaatgtaaatccagttttgtgaatcccaaactaaaaccttgtcacctatctttaatgccaatccatcaaagacggtg |
119 |
Q |
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| T |
34714586 |
tacaacaaatatatttgagaactgaatgtaaatccagttttgtgaatcccaaactaaaaccttgtcacctatcattaatgccaatccatcaaagacggtg |
34714487 |
T |
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| Q |
120 |
tagagaaaacaagacttgtttgttgttgcttgaatgacaaggcaaacttgaactctctttgatcttcttaagctgcaggaaggttgagatccaaatc |
216 |
Q |
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| T |
34714486 |
tagagaaaacaagacttgtttgttgttgcttgaatgacaaggcaaacttgaactctctttgatcttcttaagctgcaggaaggttgagatccaaatc |
34714390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 34710889 - 34710694
Alignment:
| Q |
20 |
tacagcaaatatatttgagaactgaatgtaaatccagttttgtgaatcccaaactaaaaccttgtcacctatctttaatgccaatccatcaaagacggtg |
119 |
Q |
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| T |
34710889 |
tacaacaaatatatttaagaaatga-tgtaaacccagtttggtgaatcccaaactaaaactttgtcacttgtcagtaatgacaatccacccaagcaggtg |
34710791 |
T |
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| Q |
120 |
tagagaaaacaagacttgtttgttgttgcttgaatgacaaggcaaacttgaactctctttgatcttcttaagctgcaggaaggttgagatccaaatc |
216 |
Q |
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| T |
34710790 |
cacagaaaacaagacttgtttgttgatgcttggatgataagacaaactaggattctctttgatcttcttaagctgcaggaaggttgagatccaaatc |
34710694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 40690150 - 40690092
Alignment:
| Q |
158 |
aaggcaaacttgaactctctttgatcttcttaagctgcaggaaggttgagatccaaatc |
216 |
Q |
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| T |
40690150 |
aaggcaaacttagattctctatgatcatcttcaggtgcaggaaggttgagatccaaatc |
40690092 |
T |
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