View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3245_high_1_N (Length: 567)
Name: NF3245_high_1_N
Description: NF3245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3245_high_1_N |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-172; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 23 - 373
Target Start/End: Complemental strand, 40690591 - 40690241
Alignment:
| Q |
23 |
acatcatcacattctttggcacagaataaaaagagcaaatagaaaaaattaatatgaaaaagattcacaacatgagctatacatgagttgttgtgtagac |
122 |
Q |
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| T |
40690591 |
acatcatcacattctttggcacagaaaaaaaagagcaaatagaaaaaattaatatgaaaaagatacacaacatgagctatacatgagttgttgtgtaggc |
40690492 |
T |
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| Q |
123 |
cttttcatagaccaaattnnnnnnnnttcttcaataaacaactgaattttgtaaaaattatcaggtgcttgttcaagttgataatgaatcaaaagaatat |
222 |
Q |
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| T |
40690491 |
cttttcatagaacaaaattaaaaaaattcttcaataaacaactgaattttgtaaaaattatcaggtgcttgttcaagttgataatgaatcaaaagaatat |
40690392 |
T |
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| Q |
223 |
aatatcttacaacaaatatatttctagatttgaatgttgatgatcaagacaaatttgtttgttgatcatcatcatgttgaatccaaaaccaaaaccttgt |
322 |
Q |
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| T |
40690391 |
aatatcttacaacaaatatatttctagatttgaatgttgatgatcaagacaaatttgtttgttgatcatcatcatgttgaatccaaaaccaaaaccttgt |
40690292 |
T |
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| Q |
323 |
tacttgtctcagtaatgacaatccaccaaagctggtgcagagaagacaaga |
373 |
Q |
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| T |
40690291 |
tacttgtctcagtaatgacaatccaccaaagctggtgcagagaagacaaga |
40690241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 455 - 533
Target Start/End: Complemental strand, 40690156 - 40690078
Alignment:
| Q |
455 |
gaagcaaaggcaaacttagattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaagacaaaacat |
533 |
Q |
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| T |
40690156 |
gaagcaaaggcaaacttagattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaagacaaaacat |
40690078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 525
Target Start/End: Complemental strand, 34714448 - 34714384
Alignment:
| Q |
461 |
aaggcaaacttagattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaaga |
525 |
Q |
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| T |
34714448 |
aaggcaaacttgaactctctttgatcttcttaagctgcaggaaggttgagatccaaatccaaaga |
34714384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 473 - 524
Target Start/End: Complemental strand, 34710740 - 34710689
Alignment:
| Q |
473 |
gattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaag |
524 |
Q |
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| T |
34710740 |
gattctctttgatcttcttaagctgcaggaaggttgagatccaaatccaaag |
34710689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 34710848 - 34710777
Alignment:
| Q |
300 |
tgaatccaaaaccaaaaccttgttacttgtctcagtaatgacaatccaccaaagctggtgcagagaagacaaga |
373 |
Q |
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| T |
34710848 |
tgaatcccaaactaaaactttgtcacttgtc--agtaatgacaatccacccaagcaggtgcacagaaaacaaga |
34710777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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