View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3246_high_3 (Length: 249)
Name: NF3246_high_3
Description: NF3246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3246_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 25797633 - 25797871
Alignment:
| Q |
1 |
ttgaaatcccttcacactaactcatttgcactaaaaacatactaattgatttctcttcaaatttagatgaggcttttctgattccaaatggtagaaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25797633 |
ttgaaatcccttcacactaactcatttgcactaaaaacatactaattgatttctcttcaaatttagatgaggcttttctgattccaaatggtagaaaatg |
25797732 |
T |
|
| Q |
101 |
gttcatcctttgtggaactccttagcttaaatattatataaacaatcattccaactaaaaatccaaatgatgcatttgatccaaccattgaaacagcagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25797733 |
gttcatcctttgtggaactccttagcttaaatattatataaacaatcattccaactaaaaatccaaatgatgcatttgatccaaccattgaaacagcagt |
25797832 |
T |
|
| Q |
201 |
ggaaataagagccacaaagaaatcttctttgctattcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25797833 |
ggaaataagagccacaaagaaatcttctttgctattcat |
25797871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 242
Target Start/End: Complemental strand, 1808528 - 1808338
Alignment:
| Q |
52 |
tctcttcaaatttagatgaggcttttctgattccaaatggtagaaaatggttcatcctttgtggaactccttagcttaaatattatataaacaatcattc |
151 |
Q |
| |
|
||||||||||||||| | | |||||||| |||||||||||||||| ||||| ||| || | || |||||||||||| || | |||||||||||||| |
|
|
| T |
1808528 |
tctcttcaaatttagtttggacttttctggttccaaatggtagaaagtggtttatcattactccaattccttagcttaagtaacacataaacaatcattc |
1808429 |
T |
|
| Q |
152 |
caactaaaaatccaaatgatgcatttgatccaaccattgaaacagcagtggaaataagagccacaaagaaatcttctttgctattcatatc |
242 |
Q |
| |
|
|||| |||||||||| | ||| |||||||||||| ||||||||||||| ||||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
1808428 |
caaccaaaaatccaagagcagcacttgatccaaccaatgaaacagcagtgcaaataagtgccacaaaagaatcttctttactattcatatc |
1808338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 1876042 - 1875942
Alignment:
| Q |
142 |
acaatcattccaactaaaaatccaaatgatgcatttgatccaaccattgaaacagcagtggaaataagagccacaaagaaatcttctttgctattcatat |
241 |
Q |
| |
|
|||||||||||||| |||||||| | || |||| ||||||| |||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
1876042 |
acaatcattccaaccaaaaatcctagtgctgcacttgatcccaccaatgaaacagcagtgcaaataagtgccacaaaggaatcttctttgctattcatat |
1875943 |
T |
|
| Q |
242 |
c |
242 |
Q |
| |
|
| |
|
|
| T |
1875942 |
c |
1875942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University