View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3246_high_5 (Length: 236)
Name: NF3246_high_5
Description: NF3246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3246_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 40870189 - 40870386
Alignment:
| Q |
16 |
ctccaagtccaagtgagtcctacaaccagaaagtagagcaccccacatagcagatccacctttcacagaaaccttttctataagctcttccgaattcttc |
115 |
Q |
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| T |
40870189 |
ctccaagtccaagtgagtcctacaaccagaaagtagagcaccccacatagcagatccacctttcacagaaaccttttctataagctcttccgaattcttc |
40870288 |
T |
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| Q |
116 |
acaaaaccagctcgagcaaggaggtcaaccatgcagccatagtgctcaaccttgggttcaatcttgtaaacacgacgcatgagatcaaagtaccacca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870289 |
acaaaaccagctcgagcaaggaggtcaaccatgcagccatagtgctcaaccttgggttcaatcttgtaaacacgacgcatgagatcaaagtaccacca |
40870386 |
T |
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