View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3246_high_7 (Length: 219)
Name: NF3246_high_7
Description: NF3246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3246_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 42852885 - 42852690
Alignment:
| Q |
8 |
agcagcagagaaagaaatgcgcctcaatgtcgtcaagcaagtcgcaaaaataccaactataaacactacatataatcacaatctgagtaataaatttaaa |
107 |
Q |
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| T |
42852885 |
agcagcagaaaaagaaatgtgtctcaatgtcgtcaagcaagtcgcaaaaataccaactataaacactacatataatcacaatctgagtaaaaaaattaaa |
42852786 |
T |
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| Q |
108 |
acgattaaatggttatatttgttagtttcaagaaaatatcaatctccaaatattacacctattgacaagttaaacaaacaaatagtaacttacatc |
203 |
Q |
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| T |
42852785 |
acgattaaatggttatatttgttagtttcaagaaaatatcaatctccaaatattacacctattgacaagttaaacaaacaaatagtaacttacatc |
42852690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 42848050 - 42848006
Alignment:
| Q |
128 |
gttagtttcaagaaaatatcaatctccaaatattacacctattga |
172 |
Q |
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| T |
42848050 |
gttagtttcaagaaaatatgaattttcaagtattacacctattga |
42848006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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