View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3246_low_1 (Length: 393)
Name: NF3246_low_1
Description: NF3246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3246_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 4526029 - 4526259
Alignment:
| Q |
24 |
caaaaattaaaaccacgagagaaattctagattttgagcgtcaattggttagacacaacattttaaaatccacacacccaaaaatcaagaccggatgaga |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4526029 |
caaaaattaaaaccacgagagaaattctagattttgagcgtcaattggttagacacaacattttaaaatccacacacccaaaaatcaagaccggatgaga |
4526128 |
T |
|
| Q |
124 |
aattatagattttaagctgagtaatttactttgtttgcaccaccctcctcaaatacaacatcaaagaaaagctcaggatctttaccgacatcgaatgatt |
223 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| |
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| T |
4526129 |
aattatagattttaagcttagtaatttactttgtttgcaccaccctcctcaaatacaacatcagagaataggtcaggatctttaccgacatcgaatgatt |
4526228 |
T |
|
| Q |
224 |
ttaattcattgacgtatatctggtatcagag |
254 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
4526229 |
ttaattcattgacgtatatctggtatcagag |
4526259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 4527578 - 4527337
Alignment:
| Q |
13 |
atccacacacacaaaaattaaaaccacgagagaaattctagattttgagcgtcaattggttagacacaa---cattttaaaatccacacacccaaaaatc |
109 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||||| |||||| |
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| T |
4527578 |
atccacagacacaaaaattaaaaccaccagagaaattctagattttgagcgtgaattggttaaacacaaaaccattttaaaataaacacaccttaaaatc |
4527479 |
T |
|
| Q |
110 |
aagaccggatgagaaattatagattttaagctgagtaatttactttgtttgcaccaccctcctcaaatacaacatcaaagaaaagctcaggatctttacc |
209 |
Q |
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|| ||| | || ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||| |
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| T |
4527478 |
aataccacaagaaaaattctagattttaagctgagtaatttactttgtttgcaccgccctcctcaaatacaacatctgcgaaaaactcagtatctttacc |
4527379 |
T |
|
| Q |
210 |
gacatcgaatgattttaattcattgacgtatatctggtatca |
251 |
Q |
| |
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|||| |||||||||||||||||||| ||||| |||||||| |
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| T |
4527378 |
agcatctaatgattttaattcattgacatatatatggtatca |
4527337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 4535769 - 4536005
Alignment:
| Q |
16 |
cacacacacaaaaattaaaaccacgagagaaattctagattttgagcgtcaattggttagacacaa---cattttaaaatccacacacccaaaaatcaag |
112 |
Q |
| |
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||||||| |||||||||||| ||| |||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||| | ||||||||| |
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| T |
4535769 |
cacacacgcaaaaattaaaatcacaagagaaattctagattttaagcgtgaattggttaaacacaaaaacattttaaaatccacacatcaaaaaatcaat |
4535868 |
T |
|
| Q |
113 |
accggatgagaaattatagattttaagctgagtaatttactttgtttgcaccaccctcctcaaatacaacatcaaagaaaagctcaggatctttaccgac |
212 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||| ||||||||||| |
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| T |
4535869 |
accaaatgagaaattctagattttaagctgagtaatttactttgtttgcactatcctcctcaaatataacatctgtgaaaagctctggatctttaccagt |
4535968 |
T |
|
| Q |
213 |
atcgaatgattttaattcattgacgtatatctggtat |
249 |
Q |
| |
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||| |||||| |||||||||| ||||||||||||||| |
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| T |
4535969 |
atctaatgatcttaattcattaacgtatatctggtat |
4536005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 4537234 - 4537048
Alignment:
| Q |
13 |
atccacacacacaaaaattaaaaccacgagagaaattctagattttgagcgtcaattggttagacacaa-cattttaaaatccacacacccaaaaatcaa |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
4537234 |
atccacacacacaaaatttaaaaccacgagagaaattctagattttgaatgtgaattggttaaacacaaacattttaaaatccacacacccaaaaatcaa |
4537135 |
T |
|
| Q |
112 |
gaccggatgagaaattatagattttaagctgagtaatttactttgtttgcaccaccctcctcaaatacaacatcaaagaaaagctca |
198 |
Q |
| |
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|| | | || ||||| || ||||||| || ||||||||| |||||||||||| |||||||||||||||||||| | ||||||||| |
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| T |
4537134 |
tactgcaagataaattctatattttaaacttagtaatttaatttgtttgcaccgccctcctcaaatacaacatctacaaaaagctca |
4537048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 4292771 - 4292644
Alignment:
| Q |
13 |
atccacacacacaaaaattaaaaccacgagagaaattctagattttgagcgtcaattggttagacacaa---cattttaaaatccacacacccaaaaatc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | | |||||| |||||||||||||||||||||||||||| |
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| T |
4292771 |
atccacacacacaaaaattaaaaccacgagagaaattagagattttgagcgcgaattgataa-acacaaaaacattttaaaatccacacacccaaaaatc |
4292673 |
T |
|
| Q |
110 |
aagaccggatgagaaattatagattttaa |
138 |
Q |
| |
|
|||||| |||||||||| ||||| |||| |
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|
| T |
4292672 |
aagaccacatgagaaattctagatgttaa |
4292644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 254
Target Start/End: Complemental strand, 19411606 - 19411391
Alignment:
| Q |
43 |
agaaattctagattttgagcgtcaattggttagacacaa---cattttaaaatccacacacccaaaaatcaagaccggatgagaaattatagattttaag |
139 |
Q |
| |
|
|||||||| |||||||||| || ||| ||||| |||||| ||| |||||||||||||| ||||||| || ||| | |||||||| |||| ||| || |
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| T |
19411606 |
agaaattccagattttgagtgtgaatgggttaaacacaaatacatattaaaatccacacatccaaaaaataataccacaagagaaattgtagagtttgag |
19411507 |
T |
|
| Q |
140 |
ctgagtaatttactttgtttgcaccaccctcctcaaatacaacatcaaagaa---aagctcaggatctttaccgacatcgaatgattttaattcattgac |
236 |
Q |
| |
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| |||| ||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||| || || | |||||| ||||||||||| |
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| T |
19411506 |
ca-agta-tttactttgtttgcaccaccctcctcaaatacaacatcagtggaagcatgctcaggatctttacccacttctattgatttcaattcattgac |
19411409 |
T |
|
| Q |
237 |
gtatatctggtatcagag |
254 |
Q |
| |
|
|||| |||||||||||| |
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|
| T |
19411408 |
atataactggtatcagag |
19411391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 4526334 - 4526387
Alignment:
| Q |
329 |
gtgcttgcttcgaatttcagatcaaatacatttgactcttata-atatatatat |
381 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
4526334 |
gtgcttgcttcgaattgcagatcaaatacatttgactcttatatatatatatat |
4526387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 4527253 - 4527216
Alignment:
| Q |
336 |
cttcgaatttcagatcaaatacatttgactcttataat |
373 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
4527253 |
cttcgaatttgagatcaaatacatttaactcttataat |
4527216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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